# Assembly name: mDugDug1.hap1 # Organism name: Dugong dugon (dugong) # Isolate: mDugDug1 # Sex: female # Taxid: 29137 # BioSample: SAMN33212336 # BioProject: PRJNA932812 # Submitter: Vertebrate Genomes Project # Date: 2023-05-18 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JASCZL01 # Assembly method: Hifiasm + Hi-C phasing v. 0.16.1 + galaxy3; yahs v. 1.2a.2 + galaxy0 # Expected final version: no # Genome coverage: 32.0x # Sequencing technology: PacBio Sequel II HiFi; Dovetail OmniC # RefSeq category: Representative Genome # GenBank assembly accession: GCA_030035585.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_030035595.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM057460.1 <> na Primary Assembly 230923939 na SUPER_2 assembled-molecule 2 Chromosome CM057461.1 <> na Primary Assembly 211017911 na SUPER_3 assembled-molecule 3 Chromosome CM057462.1 <> na Primary Assembly 198602523 na SUPER_4 assembled-molecule 4 Chromosome CM057463.1 <> na Primary Assembly 197782591 na SUPER_5 assembled-molecule 5 Chromosome CM057464.1 <> na Primary Assembly 196391758 na SUPER_6 assembled-molecule 6 Chromosome CM057465.1 <> na Primary Assembly 192749609 na SUPER_7 assembled-molecule 7 Chromosome CM057466.1 <> na Primary Assembly 141258285 na SUPER_8 assembled-molecule 8 Chromosome CM057467.1 <> na Primary Assembly 140670990 na SUPER_9 assembled-molecule 9 Chromosome CM057468.1 <> na Primary Assembly 134205072 na SUPER_10 assembled-molecule 10 Chromosome CM057469.1 <> na Primary Assembly 130048905 na SUPER_11 assembled-molecule 11 Chromosome CM057470.1 <> na Primary Assembly 124974925 na SUPER_12 assembled-molecule 12 Chromosome CM057471.1 <> na Primary Assembly 118533941 na SUPER_13 assembled-molecule 13 Chromosome CM057472.1 <> na Primary Assembly 115457814 na SUPER_14 assembled-molecule 14 Chromosome CM057473.1 <> na Primary Assembly 114596181 na SUPER_15 assembled-molecule 15 Chromosome CM057474.1 <> na Primary Assembly 102866513 na SUPER_16 assembled-molecule 16 Chromosome CM057475.1 <> na Primary Assembly 84210578 na SUPER_17 assembled-molecule 17 Chromosome CM057476.1 <> na Primary Assembly 82808200 na SUPER_18 assembled-molecule 18 Chromosome CM057477.1 <> na Primary Assembly 81800633 na SUPER_19 assembled-molecule 19 Chromosome CM057478.1 <> na Primary Assembly 79538652 na SUPER_20 assembled-molecule 20 Chromosome CM057479.1 <> na Primary Assembly 77777096 na SUPER_21 assembled-molecule 21 Chromosome CM057480.1 <> na Primary Assembly 76245545 na SUPER_22 assembled-molecule 22 Chromosome CM057481.1 <> na Primary Assembly 72481271 na SUPER_23 assembled-molecule 23 Chromosome CM057482.1 <> na Primary Assembly 62019827 na SUPER_X assembled-molecule X Chromosome CM057483.1 <> na Primary Assembly 177379183 na SUPER_4_unloc_1 unlocalized-scaffold 4 Chromosome JASCZL010000005.1 <> na Primary Assembly 568097 na SUPER_15_unloc_1 unlocalized-scaffold 15 Chromosome JASCZL010000018.1 <> na Primary Assembly 441983 na scaffold_100 unplaced-scaffold na na JASCZL010000061.1 <> na Primary Assembly 74280 na scaffold_101 unplaced-scaffold na na JASCZL010000162.1 <> na Primary Assembly 74025 na scaffold_102 unplaced-scaffold na na JASCZL010000085.1 <> na Primary Assembly 73000 na scaffold_103 unplaced-scaffold na na JASCZL010000070.1 <> na Primary Assembly 72116 na scaffold_104 unplaced-scaffold na na JASCZL010000140.1 <> na Primary Assembly 71771 na scaffold_105 unplaced-scaffold na na JASCZL010000164.1 <> na Primary Assembly 70173 na scaffold_106 unplaced-scaffold na na JASCZL010000060.1 <> na Primary Assembly 70000 na scaffold_107 unplaced-scaffold na na JASCZL010000097.1 <> na Primary Assembly 69293 na scaffold_108 unplaced-scaffold na na JASCZL010000029.1 <> na Primary Assembly 69024 na scaffold_109 unplaced-scaffold na na JASCZL010000191.1 <> na Primary Assembly 68031 na scaffold_110 unplaced-scaffold na na JASCZL010000193.1 <> na Primary Assembly 67924 na scaffold_111 unplaced-scaffold na na JASCZL010000051.1 <> na Primary Assembly 67283 na scaffold_112 unplaced-scaffold na na JASCZL010000136.1 <> na Primary Assembly 67000 na scaffold_113 unplaced-scaffold na na JASCZL010000174.1 <> na Primary Assembly 66250 na scaffold_114 unplaced-scaffold na na JASCZL010000078.1 <> na Primary Assembly 64900 na scaffold_115 unplaced-scaffold na na JASCZL010000054.1 <> na Primary Assembly 64823 na scaffold_116 unplaced-scaffold na na JASCZL010000189.1 <> na Primary Assembly 64556 na scaffold_117 unplaced-scaffold na na JASCZL010000158.1 <> na Primary Assembly 63993 na scaffold_118 unplaced-scaffold na na JASCZL010000172.1 <> na Primary Assembly 63900 na scaffold_119 unplaced-scaffold na na JASCZL010000063.1 <> na Primary Assembly 62302 na scaffold_120 unplaced-scaffold na na JASCZL010000111.1 <> na Primary Assembly 62225 na scaffold_121 unplaced-scaffold na na JASCZL010000144.1 <> na Primary Assembly 60650 na scaffold_122 unplaced-scaffold na na JASCZL010000046.1 <> na Primary Assembly 59731 na scaffold_123 unplaced-scaffold na na JASCZL010000104.1 <> na Primary Assembly 57948 na scaffold_124 unplaced-scaffold na na JASCZL010000165.1 <> na Primary Assembly 57868 na scaffold_125 unplaced-scaffold na na JASCZL010000137.1 <> na Primary Assembly 57390 na scaffold_126 unplaced-scaffold na na JASCZL010000116.1 <> na Primary Assembly 56745 na scaffold_127 unplaced-scaffold na na JASCZL010000071.1 <> na Primary Assembly 55684 na scaffold_129 unplaced-scaffold na na JASCZL010000152.1 <> na Primary Assembly 55226 na scaffold_130 unplaced-scaffold na na JASCZL010000141.1 <> na Primary Assembly 55000 na scaffold_131 unplaced-scaffold na na JASCZL010000113.1 <> na Primary Assembly 55000 na scaffold_132 unplaced-scaffold na na JASCZL010000194.1 <> na Primary Assembly 54900 na scaffold_133 unplaced-scaffold na na JASCZL010000133.1 <> na Primary Assembly 54509 na scaffold_134 unplaced-scaffold na na JASCZL010000062.1 <> na Primary Assembly 54000 na scaffold_135 unplaced-scaffold na na JASCZL010000110.1 <> na Primary Assembly 53571 na scaffold_136 unplaced-scaffold na na JASCZL010000145.1 <> na Primary Assembly 53447 na scaffold_137 unplaced-scaffold na na JASCZL010000170.1 <> na Primary Assembly 52224 na scaffold_139 unplaced-scaffold na na JASCZL010000080.1 <> na Primary Assembly 51479 na scaffold_140 unplaced-scaffold na na JASCZL010000126.1 <> na Primary Assembly 51000 na scaffold_141 unplaced-scaffold na na JASCZL010000103.1 <> na Primary Assembly 50962 na scaffold_142 unplaced-scaffold na na JASCZL010000186.1 <> na Primary Assembly 49895 na scaffold_143 unplaced-scaffold na na JASCZL010000143.1 <> na Primary Assembly 47034 na scaffold_144 unplaced-scaffold na na JASCZL010000075.1 <> na Primary Assembly 46833 na scaffold_145 unplaced-scaffold na na JASCZL010000101.1 <> na Primary Assembly 46527 na scaffold_146 unplaced-scaffold na na JASCZL010000129.1 <> na Primary Assembly 46467 na scaffold_147 unplaced-scaffold na na JASCZL010000166.1 <> na Primary Assembly 46263 na scaffold_148 unplaced-scaffold na na JASCZL010000151.1 <> na Primary Assembly 45715 na scaffold_149 unplaced-scaffold na na JASCZL010000087.1 <> na Primary Assembly 45256 na scaffold_150 unplaced-scaffold na na JASCZL010000033.1 <> na Primary Assembly 44671 na scaffold_151 unplaced-scaffold na na JASCZL010000179.1 <> na Primary Assembly 44506 na scaffold_152 unplaced-scaffold na na JASCZL010000106.1 <> na Primary Assembly 43786 na scaffold_153 unplaced-scaffold na na JASCZL010000053.1 <> na Primary Assembly 42815 na scaffold_154 unplaced-scaffold na na JASCZL010000159.1 <> na Primary Assembly 42637 na scaffold_155 unplaced-scaffold na na JASCZL010000177.1 <> na Primary Assembly 42479 na scaffold_156 unplaced-scaffold na na JASCZL010000040.1 <> na Primary Assembly 42229 na scaffold_157 unplaced-scaffold na na JASCZL010000082.1 <> na Primary Assembly 42068 na scaffold_158 unplaced-scaffold na na JASCZL010000057.1 <> na Primary Assembly 41490 na scaffold_159 unplaced-scaffold na na JASCZL010000169.1 <> na Primary Assembly 40770 na scaffold_160 unplaced-scaffold na na JASCZL010000038.1 <> na Primary Assembly 40008 na scaffold_161 unplaced-scaffold na na JASCZL010000176.1 <> na Primary Assembly 39387 na scaffold_162 unplaced-scaffold na na JASCZL010000108.1 <> na Primary Assembly 39165 na scaffold_164 unplaced-scaffold na na JASCZL010000157.1 <> na Primary Assembly 38820 na scaffold_165 unplaced-scaffold na na JASCZL010000178.1 <> na Primary Assembly 38533 na scaffold_166 unplaced-scaffold na na JASCZL010000037.1 <> na Primary Assembly 38447 na scaffold_167 unplaced-scaffold na na JASCZL010000076.1 <> na Primary Assembly 37590 na scaffold_168 unplaced-scaffold na na JASCZL010000055.1 <> na Primary Assembly 37406 na scaffold_169 unplaced-scaffold na na JASCZL010000171.1 <> na Primary Assembly 37331 na scaffold_170 unplaced-scaffold na na JASCZL010000095.1 <> na Primary Assembly 36760 na scaffold_171 unplaced-scaffold na na JASCZL010000153.1 <> na Primary Assembly 36661 na scaffold_172 unplaced-scaffold na na JASCZL010000072.1 <> na Primary Assembly 36022 na scaffold_173 unplaced-scaffold na na JASCZL010000084.1 <> na Primary Assembly 35400 na scaffold_174 unplaced-scaffold na na JASCZL010000184.1 <> na Primary Assembly 35169 na scaffold_175 unplaced-scaffold na na JASCZL010000154.1 <> na Primary Assembly 33678 na scaffold_176 unplaced-scaffold na na JASCZL010000092.1 <> na Primary Assembly 32290 na scaffold_177 unplaced-scaffold na na JASCZL010000043.1 <> na Primary Assembly 32139 na scaffold_178 unplaced-scaffold na na JASCZL010000112.1 <> na Primary Assembly 31647 na scaffold_179 unplaced-scaffold na na JASCZL010000123.1 <> na Primary Assembly 31565 na scaffold_180 unplaced-scaffold na na JASCZL010000048.1 <> na Primary Assembly 31390 na scaffold_181 unplaced-scaffold na na JASCZL010000197.1 <> na Primary Assembly 31241 na scaffold_183 unplaced-scaffold na na JASCZL010000027.1 <> na Primary Assembly 30242 na scaffold_184 unplaced-scaffold na na JASCZL010000150.1 <> na Primary Assembly 29974 na scaffold_186 unplaced-scaffold na na JASCZL010000044.1 <> na Primary Assembly 28809 na scaffold_187 unplaced-scaffold na na JASCZL010000093.1 <> na Primary Assembly 28222 na scaffold_188 unplaced-scaffold na na JASCZL010000067.1 <> na Primary Assembly 27192 na scaffold_189 unplaced-scaffold na na JASCZL010000167.1 <> na Primary Assembly 26530 na scaffold_190 unplaced-scaffold na na JASCZL010000188.1 <> na Primary Assembly 25875 na scaffold_191 unplaced-scaffold na na JASCZL010000030.1 <> na Primary Assembly 25647 na scaffold_192 unplaced-scaffold na na JASCZL010000134.1 <> na Primary Assembly 24963 na scaffold_193 unplaced-scaffold na na JASCZL010000195.1 <> na Primary Assembly 24419 na scaffold_194 unplaced-scaffold na na JASCZL010000094.1 <> na Primary Assembly 23906 na scaffold_195 unplaced-scaffold na na JASCZL010000032.1 <> na Primary Assembly 23693 na scaffold_196 unplaced-scaffold na na JASCZL010000185.1 <> na Primary Assembly 22201 na scaffold_197 unplaced-scaffold na na JASCZL010000148.1 <> na Primary Assembly 22141 na scaffold_198 unplaced-scaffold na na JASCZL010000161.1 <> na Primary Assembly 22085 na scaffold_199 unplaced-scaffold na na JASCZL010000065.1 <> na Primary Assembly 21796 na scaffold_200 unplaced-scaffold na na JASCZL010000090.1 <> na Primary Assembly 21417 na scaffold_201 unplaced-scaffold na na JASCZL010000156.1 <> na Primary Assembly 21288 na scaffold_202 unplaced-scaffold na na JASCZL010000066.1 <> na Primary Assembly 21250 na scaffold_203 unplaced-scaffold na na JASCZL010000081.1 <> na Primary Assembly 20956 na scaffold_204 unplaced-scaffold na na JASCZL010000175.1 <> na Primary Assembly 20338 na scaffold_205 unplaced-scaffold na na JASCZL010000160.1 <> na Primary Assembly 19690 na scaffold_206 unplaced-scaffold na na JASCZL010000088.1 <> na Primary Assembly 19417 na scaffold_207 unplaced-scaffold na na JASCZL010000050.1 <> na Primary Assembly 19267 na scaffold_208 unplaced-scaffold na na JASCZL010000120.1 <> na Primary Assembly 18970 na scaffold_209 unplaced-scaffold na na JASCZL010000132.1 <> na Primary Assembly 18899 na scaffold_210 unplaced-scaffold na na JASCZL010000131.1 <> na Primary Assembly 18818 na scaffold_211 unplaced-scaffold na na JASCZL010000100.1 <> na Primary Assembly 18177 na scaffold_212 unplaced-scaffold na na JASCZL010000187.1 <> na Primary Assembly 17638 na scaffold_213 unplaced-scaffold na na JASCZL010000138.1 <> na Primary Assembly 17378 na scaffold_214 unplaced-scaffold na na JASCZL010000069.1 <> na Primary Assembly 17081 na scaffold_215 unplaced-scaffold na na JASCZL010000102.1 <> na Primary Assembly 16861 na scaffold_216 unplaced-scaffold na na JASCZL010000125.1 <> na Primary Assembly 16264 na scaffold_217 unplaced-scaffold na na JASCZL010000163.1 <> na Primary Assembly 15709 na scaffold_218 unplaced-scaffold na na JASCZL010000147.1 <> na Primary Assembly 13789 na scaffold_219 unplaced-scaffold na na JASCZL010000089.1 <> na Primary Assembly 13763 na scaffold_220 unplaced-scaffold na na JASCZL010000034.1 <> na Primary Assembly 7911 na scaffold_221 unplaced-scaffold na na JASCZL010000181.1 <> na Primary Assembly 6772 na scaffold_32 unplaced-scaffold na na JASCZL010000073.1 <> na Primary Assembly 454191 na scaffold_35 unplaced-scaffold na na JASCZL010000083.1 <> na Primary Assembly 370508 na scaffold_36 unplaced-scaffold na na JASCZL010000077.1 <> na Primary Assembly 364099 na scaffold_40 unplaced-scaffold na na JASCZL010000028.1 <> na Primary Assembly 261213 na scaffold_41 unplaced-scaffold na na JASCZL010000173.1 <> na Primary Assembly 258091 na scaffold_42 unplaced-scaffold na na JASCZL010000096.1 <> na Primary Assembly 256346 na scaffold_43 unplaced-scaffold na na JASCZL010000155.1 <> na Primary Assembly 246099 na scaffold_45 unplaced-scaffold na na JASCZL010000056.1 <> na Primary Assembly 231132 na scaffold_48 unplaced-scaffold na na JASCZL010000068.1 <> na Primary Assembly 217445 na scaffold_50 unplaced-scaffold na na JASCZL010000058.1 <> na Primary Assembly 211604 na scaffold_52 unplaced-scaffold na na JASCZL010000115.1 <> na Primary Assembly 206000 na scaffold_54 unplaced-scaffold na na JASCZL010000128.1 <> na Primary Assembly 197750 na scaffold_55 unplaced-scaffold na na JASCZL010000041.1 <> na Primary Assembly 194006 na scaffold_56 unplaced-scaffold na na JASCZL010000035.1 <> na Primary Assembly 190162 na scaffold_58 unplaced-scaffold na na JASCZL010000045.1 <> na Primary Assembly 170000 na scaffold_59 unplaced-scaffold na na JASCZL010000182.1 <> na Primary Assembly 166942 na scaffold_60 unplaced-scaffold na na JASCZL010000059.1 <> na Primary Assembly 164662 na scaffold_61 unplaced-scaffold na na JASCZL010000190.1 <> na Primary Assembly 163971 na scaffold_62 unplaced-scaffold na na JASCZL010000117.1 <> na Primary Assembly 160749 na scaffold_63 unplaced-scaffold na na JASCZL010000146.1 <> na Primary Assembly 151661 na scaffold_64 unplaced-scaffold na na JASCZL010000130.1 <> na Primary Assembly 150000 na scaffold_65 unplaced-scaffold na na JASCZL010000039.1 <> na Primary Assembly 149000 na scaffold_66 unplaced-scaffold na na JASCZL010000036.1 <> na Primary Assembly 144138 na scaffold_67 unplaced-scaffold na na JASCZL010000091.1 <> na Primary Assembly 132000 na scaffold_68 unplaced-scaffold na na JASCZL010000042.1 <> na Primary Assembly 125045 na scaffold_70 unplaced-scaffold na na JASCZL010000086.1 <> na Primary Assembly 123229 na scaffold_71 unplaced-scaffold na na JASCZL010000135.1 <> na Primary Assembly 121930 na scaffold_72 unplaced-scaffold na na JASCZL010000047.1 <> na Primary Assembly 121485 na scaffold_73 unplaced-scaffold na na JASCZL010000196.1 <> na Primary Assembly 121000 na scaffold_74 unplaced-scaffold na na JASCZL010000183.1 <> na Primary Assembly 119195 na scaffold_75 unplaced-scaffold na na JASCZL010000107.1 <> na Primary Assembly 117000 na scaffold_76 unplaced-scaffold na na JASCZL010000109.1 <> na Primary Assembly 113950 na scaffold_77 unplaced-scaffold na na JASCZL010000074.1 <> na Primary Assembly 108000 na scaffold_78 unplaced-scaffold na na JASCZL010000114.1 <> na Primary Assembly 107243 na scaffold_79 unplaced-scaffold na na JASCZL010000127.1 <> na Primary Assembly 106810 na scaffold_80 unplaced-scaffold na na JASCZL010000149.1 <> na Primary Assembly 105851 na scaffold_81 unplaced-scaffold na na JASCZL010000119.1 <> na Primary Assembly 105658 na scaffold_82 unplaced-scaffold na na JASCZL010000198.1 <> na Primary Assembly 102466 na scaffold_83 unplaced-scaffold na na JASCZL010000049.1 <> na Primary Assembly 100014 na scaffold_84 unplaced-scaffold na na JASCZL010000031.1 <> na Primary Assembly 98000 na scaffold_85 unplaced-scaffold na na JASCZL010000124.1 <> na Primary Assembly 95361 na scaffold_86 unplaced-scaffold na na JASCZL010000122.1 <> na Primary Assembly 94422 na scaffold_87 unplaced-scaffold na na JASCZL010000168.1 <> na Primary Assembly 93164 na scaffold_88 unplaced-scaffold na na JASCZL010000139.1 <> na Primary Assembly 93065 na scaffold_89 unplaced-scaffold na na JASCZL010000098.1 <> na Primary Assembly 92522 na scaffold_90 unplaced-scaffold na na JASCZL010000079.1 <> na Primary Assembly 91948 na scaffold_91 unplaced-scaffold na na JASCZL010000142.1 <> na Primary Assembly 91123 na scaffold_92 unplaced-scaffold na na JASCZL010000052.1 <> na Primary Assembly 88000 na scaffold_93 unplaced-scaffold na na JASCZL010000192.1 <> na Primary Assembly 86446 na scaffold_94 unplaced-scaffold na na JASCZL010000180.1 <> na Primary Assembly 85766 na scaffold_95 unplaced-scaffold na na JASCZL010000105.1 <> na Primary Assembly 82000 na scaffold_96 unplaced-scaffold na na JASCZL010000099.1 <> na Primary Assembly 80522 na scaffold_97 unplaced-scaffold na na JASCZL010000064.1 <> na Primary Assembly 80397 na scaffold_98 unplaced-scaffold na na JASCZL010000118.1 <> na Primary Assembly 80066 na scaffold_99 unplaced-scaffold na na JASCZL010000121.1 <> na Primary Assembly 77000 na