# Assembly name: mDugDug1.hap2 # Organism name: Dugong dugon (dugong) # Isolate: mDugDug1 # Sex: female # Taxid: 29137 # BioSample: SAMN33212336 # BioProject: PRJNA932821 # Submitter: Vertebrate Genomes Project # Date: 2023-05-16 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JASCZM01 # Assembly method: Hifiasm + Hi-C phasing v. 0.16.1 + galaxy3; yahs v. 1.2a.2 + galaxy0 # Expected final version: no # Genome coverage: 32.0x # Sequencing technology: PacBio Sequel II HiFi; Dovetial OmniC # GenBank assembly accession: GCA_030020955.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_030020965.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold_1 unplaced-scaffold na na JASCZM010000001.1 <> na Primary Assembly 230272189 na scaffold_10 unplaced-scaffold na na JASCZM010000010.1 <> na Primary Assembly 134058069 na scaffold_100 unplaced-scaffold na na JASCZM010000100.1 <> na Primary Assembly 73000 na scaffold_101 unplaced-scaffold na na JASCZM010000101.1 <> na Primary Assembly 73000 na scaffold_102 unplaced-scaffold na na JASCZM010000102.1 <> na Primary Assembly 71934 na scaffold_103 unplaced-scaffold na na JASCZM010000103.1 <> na Primary Assembly 70573 na scaffold_104 unplaced-scaffold na na JASCZM010000104.1 <> na Primary Assembly 69297 na scaffold_105 unplaced-scaffold na na JASCZM010000105.1 <> na Primary Assembly 68381 na scaffold_106 unplaced-scaffold na na JASCZM010000106.1 <> na Primary Assembly 66807 na scaffold_107 unplaced-scaffold na na JASCZM010000107.1 <> na Primary Assembly 65849 na scaffold_108 unplaced-scaffold na na JASCZM010000108.1 <> na Primary Assembly 65254 na scaffold_109 unplaced-scaffold na na JASCZM010000109.1 <> na Primary Assembly 64556 na scaffold_11 unplaced-scaffold na na JASCZM010000011.1 <> na Primary Assembly 129610168 na scaffold_110 unplaced-scaffold na na JASCZM010000110.1 <> na Primary Assembly 64035 na scaffold_111 unplaced-scaffold na na JASCZM010000111.1 <> na Primary Assembly 63491 na scaffold_112 unplaced-scaffold na na JASCZM010000112.1 <> na Primary Assembly 63251 na scaffold_113 unplaced-scaffold na na JASCZM010000113.1 <> na Primary Assembly 61717 na scaffold_114 unplaced-scaffold na na JASCZM010000114.1 <> na Primary Assembly 60650 na scaffold_115 unplaced-scaffold na na JASCZM010000115.1 <> na Primary Assembly 57619 na scaffold_116 unplaced-scaffold na na JASCZM010000116.1 <> na Primary Assembly 56649 na scaffold_117 unplaced-scaffold na na JASCZM010000117.1 <> na Primary Assembly 56567 na scaffold_118 unplaced-scaffold na na JASCZM010000118.1 <> na Primary Assembly 56412 na scaffold_119 unplaced-scaffold na na JASCZM010000119.1 <> na Primary Assembly 55777 na scaffold_12 unplaced-scaffold na na JASCZM010000012.1 <> na Primary Assembly 123396292 na scaffold_120 unplaced-scaffold na na JASCZM010000120.1 <> na Primary Assembly 54637 na scaffold_121 unplaced-scaffold na na JASCZM010000121.1 <> na Primary Assembly 54244 na scaffold_122 unplaced-scaffold na na JASCZM010000122.1 <> na Primary Assembly 53000 na scaffold_123 unplaced-scaffold na na JASCZM010000123.1 <> na Primary Assembly 53000 na scaffold_124 unplaced-scaffold na na JASCZM010000124.1 <> na Primary Assembly 53000 na scaffold_125 unplaced-scaffold na na JASCZM010000125.1 <> na Primary Assembly 53000 na scaffold_126 unplaced-scaffold na na JASCZM010000126.1 <> na Primary Assembly 52991 na scaffold_127 unplaced-scaffold na na JASCZM010000127.1 <> na Primary Assembly 52224 na scaffold_128 unplaced-scaffold na na JASCZM010000128.1 <> na Primary Assembly 51995 na scaffold_13 unplaced-scaffold na na JASCZM010000013.1 <> na Primary Assembly 118464079 na scaffold_130 unplaced-scaffold na na JASCZM010000129.1 <> na Primary Assembly 51592 na scaffold_131 unplaced-scaffold na na JASCZM010000130.1 <> na Primary Assembly 51000 na scaffold_132 unplaced-scaffold na na JASCZM010000131.1 <> na Primary Assembly 49324 na scaffold_133 unplaced-scaffold na na JASCZM010000132.1 <> na Primary Assembly 45959 na scaffold_134 unplaced-scaffold na na JASCZM010000133.1 <> na Primary Assembly 44693 na scaffold_135 unplaced-scaffold na na JASCZM010000134.1 <> na Primary Assembly 44506 na scaffold_136 unplaced-scaffold na na JASCZM010000135.1 <> na Primary Assembly 43485 na scaffold_137 unplaced-scaffold na na JASCZM010000136.1 <> na Primary Assembly 43347 na scaffold_138 unplaced-scaffold na na JASCZM010000137.1 <> na Primary Assembly 42815 na scaffold_139 unplaced-scaffold na na JASCZM010000138.1 <> na Primary Assembly 42022 na scaffold_14 unplaced-scaffold na na JASCZM010000014.1 <> na Primary Assembly 115504918 na scaffold_140 unplaced-scaffold na na JASCZM010000139.1 <> na Primary Assembly 41938 na scaffold_141 unplaced-scaffold na na JASCZM010000140.1 <> na Primary Assembly 40683 na scaffold_142 unplaced-scaffold na na JASCZM010000141.1 <> na Primary Assembly 40008 na scaffold_143 unplaced-scaffold na na JASCZM010000142.1 <> na Primary Assembly 39241 na scaffold_145 unplaced-scaffold na na JASCZM010000143.1 <> na Primary Assembly 37055 na scaffold_146 unplaced-scaffold na na JASCZM010000144.1 <> na Primary Assembly 36022 na scaffold_147 unplaced-scaffold na na JASCZM010000145.1 <> na Primary Assembly 35839 na scaffold_148 unplaced-scaffold na na JASCZM010000146.1 <> na Primary Assembly 35169 na scaffold_149 unplaced-scaffold na na JASCZM010000147.1 <> na Primary Assembly 34718 na scaffold_15 unplaced-scaffold na na JASCZM010000015.1 <> na Primary Assembly 114398908 na scaffold_150 unplaced-scaffold na na JASCZM010000148.1 <> na Primary Assembly 34518 na scaffold_151 unplaced-scaffold na na JASCZM010000149.1 <> na Primary Assembly 34375 na scaffold_152 unplaced-scaffold na na JASCZM010000150.1 <> na Primary Assembly 32000 na scaffold_153 unplaced-scaffold na na JASCZM010000151.1 <> na Primary Assembly 31235 na scaffold_154 unplaced-scaffold na na JASCZM010000152.1 <> na Primary Assembly 30825 na scaffold_155 unplaced-scaffold na na JASCZM010000153.1 <> na Primary Assembly 30146 na scaffold_156 unplaced-scaffold na na JASCZM010000154.1 <> na Primary Assembly 30145 na scaffold_157 unplaced-scaffold na na JASCZM010000155.1 <> na Primary Assembly 27851 na scaffold_158 unplaced-scaffold na na JASCZM010000156.1 <> na Primary Assembly 27510 na scaffold_159 unplaced-scaffold na na JASCZM010000157.1 <> na Primary Assembly 27338 na scaffold_16 unplaced-scaffold na na JASCZM010000016.1 <> na Primary Assembly 102739349 na scaffold_160 unplaced-scaffold na na JASCZM010000158.1 <> na Primary Assembly 26710 na scaffold_161 unplaced-scaffold na na JASCZM010000159.1 <> na Primary Assembly 26588 na scaffold_162 unplaced-scaffold na na JASCZM010000160.1 <> na Primary Assembly 26530 na scaffold_163 unplaced-scaffold na na JASCZM010000161.1 <> na Primary Assembly 24540 na scaffold_164 unplaced-scaffold na na JASCZM010000162.1 <> na Primary Assembly 24317 na scaffold_166 unplaced-scaffold na na JASCZM010000163.1 <> na Primary Assembly 21417 na scaffold_168 unplaced-scaffold na na JASCZM010000164.1 <> na Primary Assembly 19417 na scaffold_17 unplaced-scaffold na na JASCZM010000017.1 <> na Primary Assembly 83830088 na scaffold_175 unplaced-scaffold na na JASCZM010000165.1 <> na Primary Assembly 17000 na scaffold_18 unplaced-scaffold na na JASCZM010000018.1 <> na Primary Assembly 83284716 na scaffold_187 unplaced-scaffold na na JASCZM010000166.1 <> na Primary Assembly 13789 na scaffold_188 unplaced-scaffold na na JASCZM010000167.1 <> na Primary Assembly 7912 na scaffold_19 unplaced-scaffold na na JASCZM010000019.1 <> na Primary Assembly 81463948 na scaffold_2 unplaced-scaffold na na JASCZM010000002.1 <> na Primary Assembly 210934045 na scaffold_20 unplaced-scaffold na na JASCZM010000020.1 <> na Primary Assembly 78515374 na scaffold_21 unplaced-scaffold na na JASCZM010000021.1 <> na Primary Assembly 77760968 na scaffold_22 unplaced-scaffold na na JASCZM010000022.1 <> na Primary Assembly 76034909 na scaffold_23 unplaced-scaffold na na JASCZM010000023.1 <> na Primary Assembly 72609921 na scaffold_24 unplaced-scaffold na na JASCZM010000024.1 <> na Primary Assembly 60916330 na scaffold_25 unplaced-scaffold na na JASCZM010000025.1 <> na Primary Assembly 1257919 na scaffold_26 unplaced-scaffold na na JASCZM010000026.1 <> na Primary Assembly 1038876 na scaffold_27 unplaced-scaffold na na JASCZM010000027.1 <> na Primary Assembly 691895 na scaffold_28 unplaced-scaffold na na JASCZM010000028.1 <> na Primary Assembly 510000 na scaffold_29 unplaced-scaffold na na JASCZM010000029.1 <> na Primary Assembly 447390 na scaffold_3 unplaced-scaffold na na JASCZM010000003.1 <> na Primary Assembly 198887353 na scaffold_30 unplaced-scaffold na na JASCZM010000030.1 <> na Primary Assembly 435043 na scaffold_31 unplaced-scaffold na na JASCZM010000031.1 <> na Primary Assembly 424705 na scaffold_32 unplaced-scaffold na na JASCZM010000032.1 <> na Primary Assembly 377931 na scaffold_33 unplaced-scaffold na na JASCZM010000033.1 <> na Primary Assembly 367717 na scaffold_34 unplaced-scaffold na na JASCZM010000034.1 <> na Primary Assembly 346349 na scaffold_35 unplaced-scaffold na na JASCZM010000035.1 <> na Primary Assembly 324520 na scaffold_36 unplaced-scaffold na na JASCZM010000036.1 <> na Primary Assembly 324148 na scaffold_37 unplaced-scaffold na na JASCZM010000037.1 <> na Primary Assembly 311707 na scaffold_38 unplaced-scaffold na na JASCZM010000038.1 <> na Primary Assembly 296640 na scaffold_39 unplaced-scaffold na na JASCZM010000039.1 <> na Primary Assembly 283888 na scaffold_4 unplaced-scaffold na na JASCZM010000004.1 <> na Primary Assembly 197516147 na scaffold_40 unplaced-scaffold na na JASCZM010000040.1 <> na Primary Assembly 265901 na scaffold_41 unplaced-scaffold na na JASCZM010000041.1 <> na Primary Assembly 262043 na scaffold_42 unplaced-scaffold na na JASCZM010000042.1 <> na Primary Assembly 258683 na scaffold_43 unplaced-scaffold na na JASCZM010000043.1 <> na Primary Assembly 247936 na scaffold_44 unplaced-scaffold na na JASCZM010000044.1 <> na Primary Assembly 242844 na scaffold_45 unplaced-scaffold na na JASCZM010000045.1 <> na Primary Assembly 231843 na scaffold_46 unplaced-scaffold na na JASCZM010000046.1 <> na Primary Assembly 218652 na scaffold_47 unplaced-scaffold na na JASCZM010000047.1 <> na Primary Assembly 214650 na scaffold_48 unplaced-scaffold na na JASCZM010000048.1 <> na Primary Assembly 211539 na scaffold_49 unplaced-scaffold na na JASCZM010000049.1 <> na Primary Assembly 206443 na scaffold_5 unplaced-scaffold na na JASCZM010000005.1 <> na Primary Assembly 196824950 na scaffold_50 unplaced-scaffold na na JASCZM010000050.1 <> na Primary Assembly 191923 na scaffold_51 unplaced-scaffold na na JASCZM010000051.1 <> na Primary Assembly 175817 na scaffold_52 unplaced-scaffold na na JASCZM010000052.1 <> na Primary Assembly 173852 na scaffold_53 unplaced-scaffold na na JASCZM010000053.1 <> na Primary Assembly 169000 na scaffold_54 unplaced-scaffold na na JASCZM010000054.1 <> na Primary Assembly 168000 na scaffold_55 unplaced-scaffold na na JASCZM010000055.1 <> na Primary Assembly 163638 na scaffold_56 unplaced-scaffold na na JASCZM010000056.1 <> na Primary Assembly 157575 na scaffold_57 unplaced-scaffold na na JASCZM010000057.1 <> na Primary Assembly 155876 na scaffold_58 unplaced-scaffold na na JASCZM010000058.1 <> na Primary Assembly 147246 na scaffold_59 unplaced-scaffold na na JASCZM010000059.1 <> na Primary Assembly 142361 na scaffold_6 unplaced-scaffold na na JASCZM010000006.1 <> na Primary Assembly 192597087 na scaffold_60 unplaced-scaffold na na JASCZM010000060.1 <> na Primary Assembly 141747 na scaffold_61 unplaced-scaffold na na JASCZM010000061.1 <> na Primary Assembly 137406 na scaffold_62 unplaced-scaffold na na JASCZM010000062.1 <> na Primary Assembly 136385 na scaffold_63 unplaced-scaffold na na JASCZM010000063.1 <> na Primary Assembly 136000 na scaffold_64 unplaced-scaffold na na JASCZM010000064.1 <> na Primary Assembly 134142 na scaffold_65 unplaced-scaffold na na JASCZM010000065.1 <> na Primary Assembly 133665 na scaffold_66 unplaced-scaffold na na JASCZM010000066.1 <> na Primary Assembly 133113 na scaffold_67 unplaced-scaffold na na JASCZM010000067.1 <> na Primary Assembly 127000 na scaffold_68 unplaced-scaffold na na JASCZM010000068.1 <> na Primary Assembly 125602 na scaffold_69 unplaced-scaffold na na JASCZM010000069.1 <> na Primary Assembly 122373 na scaffold_7 unplaced-scaffold na na JASCZM010000007.1 <> na Primary Assembly 176986036 na scaffold_70 unplaced-scaffold na na JASCZM010000070.1 <> na Primary Assembly 121873 na scaffold_71 unplaced-scaffold na na JASCZM010000071.1 <> na Primary Assembly 118565 na scaffold_72 unplaced-scaffold na na JASCZM010000072.1 <> na Primary Assembly 115456 na scaffold_73 unplaced-scaffold na na JASCZM010000073.1 <> na Primary Assembly 115000 na scaffold_74 unplaced-scaffold na na JASCZM010000074.1 <> na Primary Assembly 114856 na scaffold_75 unplaced-scaffold na na JASCZM010000075.1 <> na Primary Assembly 110989 na scaffold_76 unplaced-scaffold na na JASCZM010000076.1 <> na Primary Assembly 107000 na scaffold_77 unplaced-scaffold na na JASCZM010000077.1 <> na Primary Assembly 105851 na scaffold_78 unplaced-scaffold na na JASCZM010000078.1 <> na Primary Assembly 105669 na scaffold_79 unplaced-scaffold na na JASCZM010000079.1 <> na Primary Assembly 102935 na scaffold_8 unplaced-scaffold na na JASCZM010000008.1 <> na Primary Assembly 141135690 na scaffold_80 unplaced-scaffold na na JASCZM010000080.1 <> na Primary Assembly 102713 na scaffold_81 unplaced-scaffold na na JASCZM010000081.1 <> na Primary Assembly 95000 na scaffold_82 unplaced-scaffold na na JASCZM010000082.1 <> na Primary Assembly 94483 na scaffold_83 unplaced-scaffold na na JASCZM010000083.1 <> na Primary Assembly 93264 na scaffold_84 unplaced-scaffold na na JASCZM010000084.1 <> na Primary Assembly 92784 na scaffold_85 unplaced-scaffold na na JASCZM010000085.1 <> na Primary Assembly 91136 na scaffold_86 unplaced-scaffold na na JASCZM010000086.1 <> na Primary Assembly 90644 na scaffold_87 unplaced-scaffold na na JASCZM010000087.1 <> na Primary Assembly 89669 na scaffold_88 unplaced-scaffold na na JASCZM010000088.1 <> na Primary Assembly 88620 na scaffold_89 unplaced-scaffold na na JASCZM010000089.1 <> na Primary Assembly 85149 na scaffold_9 unplaced-scaffold na na JASCZM010000009.1 <> na Primary Assembly 138031769 na scaffold_90 unplaced-scaffold na na JASCZM010000090.1 <> na Primary Assembly 85000 na scaffold_91 unplaced-scaffold na na JASCZM010000091.1 <> na Primary Assembly 84000 na scaffold_92 unplaced-scaffold na na JASCZM010000092.1 <> na Primary Assembly 80283 na scaffold_93 unplaced-scaffold na na JASCZM010000093.1 <> na Primary Assembly 80204 na scaffold_94 unplaced-scaffold na na JASCZM010000094.1 <> na Primary Assembly 80150 na scaffold_95 unplaced-scaffold na na JASCZM010000095.1 <> na Primary Assembly 78000 na scaffold_96 unplaced-scaffold na na JASCZM010000096.1 <> na Primary Assembly 77000 na scaffold_97 unplaced-scaffold na na JASCZM010000097.1 <> na Primary Assembly 75742 na scaffold_98 unplaced-scaffold na na JASCZM010000098.1 <> na Primary Assembly 75171 na scaffold_99 unplaced-scaffold na na JASCZM010000099.1 <> na Primary Assembly 74094 na