# Assembly name: rGavGan2.hap2 # Organism name: Gavialis gangeticus (Gharial) # Isolate: rGavGan2 # Sex: male # Taxid: 94835 # BioSample: SAMN34116453 # BioProject: PRJNA953442 # Submitter: Vertebrate Genomes Project # Date: 2023-05-22 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JASFZR01 # Assembly method: Hifiasm + Hi-C phasing v. 0.16.1 + galaxy3; Bionano Solve v. 3.7; yahs v. 1.2a.2 + galaxy0 # Expected final version: no # Genome coverage: 35.0x # Sequencing technology: PacBio Sequel II HiFi; Bionano DLS; Arima Hi-C v2 # GenBank assembly accession: GCA_030020295.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_030020445.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM057589.1 <> na Primary Assembly 473287416 na SUPER_2 assembled-molecule 2 Chromosome CM057590.1 <> na Primary Assembly 312449569 na SUPER_3 assembled-molecule 3 Chromosome CM057591.1 <> na Primary Assembly 299944300 na SUPER_4 assembled-molecule 4 Chromosome CM057592.1 <> na Primary Assembly 257319116 na SUPER_5 assembled-molecule 5 Chromosome CM057593.1 <> na Primary Assembly 217935827 na SUPER_6 assembled-molecule 6 Chromosome CM057594.1 <> na Primary Assembly 101810359 na SUPER_7 assembled-molecule 7 Chromosome CM057595.1 <> na Primary Assembly 95825172 na SUPER_8 assembled-molecule 8 Chromosome CM057596.1 <> na Primary Assembly 85069751 na SUPER_9 assembled-molecule 9 Chromosome CM057597.1 <> na Primary Assembly 84235120 na SUPER_10 assembled-molecule 10 Chromosome CM057598.1 <> na Primary Assembly 78533957 na SUPER_11 assembled-molecule 11 Chromosome CM057599.1 <> na Primary Assembly 73937581 na SUPER_12 assembled-molecule 12 Chromosome CM057600.1 <> na Primary Assembly 71320994 na SUPER_13 assembled-molecule 13 Chromosome CM057601.1 <> na Primary Assembly 61002580 na SUPER_14 assembled-molecule 14 Chromosome CM057602.1 <> na Primary Assembly 45034626 na SUPER_15 assembled-molecule 15 Chromosome CM057603.1 <> na Primary Assembly 30093571 na SUPER_16 assembled-molecule 16 Chromosome CM057604.1 <> na Primary Assembly 29278497 na scaffold_100 unplaced-scaffold na na JASFZR010000147.1 <> na Primary Assembly 109464 na scaffold_101 unplaced-scaffold na na JASFZR010000035.1 <> na Primary Assembly 109081 na scaffold_102 unplaced-scaffold na na JASFZR010000108.1 <> na Primary Assembly 106596 na scaffold_104 unplaced-scaffold na na JASFZR010000128.1 <> na Primary Assembly 105434 na scaffold_105 unplaced-scaffold na na JASFZR010000065.1 <> na Primary Assembly 104525 na scaffold_106 unplaced-scaffold na na JASFZR010000098.1 <> na Primary Assembly 104000 na scaffold_107 unplaced-scaffold na na JASFZR010000034.1 <> na Primary Assembly 103975 na scaffold_108 unplaced-scaffold na na JASFZR010000050.1 <> na Primary Assembly 102000 na scaffold_109 unplaced-scaffold na na JASFZR010000045.1 <> na Primary Assembly 101444 na scaffold_110 unplaced-scaffold na na JASFZR010000097.1 <> na Primary Assembly 100205 na scaffold_111 unplaced-scaffold na na JASFZR010000043.1 <> na Primary Assembly 95094 na scaffold_112 unplaced-scaffold na na JASFZR010000127.1 <> na Primary Assembly 94753 na scaffold_113 unplaced-scaffold na na JASFZR010000055.1 <> na Primary Assembly 93934 na scaffold_114 unplaced-scaffold na na JASFZR010000040.1 <> na Primary Assembly 91000 na scaffold_115 unplaced-scaffold na na JASFZR010000102.1 <> na Primary Assembly 90832 na scaffold_116 unplaced-scaffold na na JASFZR010000074.1 <> na Primary Assembly 90644 na scaffold_117 unplaced-scaffold na na JASFZR010000152.1 <> na Primary Assembly 90000 na scaffold_118 unplaced-scaffold na na JASFZR010000159.1 <> na Primary Assembly 89870 na scaffold_119 unplaced-scaffold na na JASFZR010000067.1 <> na Primary Assembly 88504 na scaffold_120 unplaced-scaffold na na JASFZR010000018.1 <> na Primary Assembly 87000 na scaffold_121 unplaced-scaffold na na JASFZR010000142.1 <> na Primary Assembly 85000 na scaffold_122 unplaced-scaffold na na JASFZR010000047.1 <> na Primary Assembly 83767 na scaffold_123 unplaced-scaffold na na JASFZR010000138.1 <> na Primary Assembly 82599 na scaffold_124 unplaced-scaffold na na JASFZR010000129.1 <> na Primary Assembly 82447 na scaffold_125 unplaced-scaffold na na JASFZR010000079.1 <> na Primary Assembly 82206 na scaffold_126 unplaced-scaffold na na JASFZR010000133.1 <> na Primary Assembly 81097 na scaffold_127 unplaced-scaffold na na JASFZR010000027.1 <> na Primary Assembly 81000 na scaffold_128 unplaced-scaffold na na JASFZR010000153.1 <> na Primary Assembly 81000 na scaffold_129 unplaced-scaffold na na JASFZR010000088.1 <> na Primary Assembly 80615 na scaffold_130 unplaced-scaffold na na JASFZR010000086.1 <> na Primary Assembly 79681 na scaffold_131 unplaced-scaffold na na JASFZR010000017.1 <> na Primary Assembly 79527 na scaffold_132 unplaced-scaffold na na JASFZR010000154.1 <> na Primary Assembly 79098 na scaffold_133 unplaced-scaffold na na JASFZR010000021.1 <> na Primary Assembly 78432 na scaffold_134 unplaced-scaffold na na JASFZR010000132.1 <> na Primary Assembly 78042 na scaffold_135 unplaced-scaffold na na JASFZR010000057.1 <> na Primary Assembly 78023 na scaffold_136 unplaced-scaffold na na JASFZR010000026.1 <> na Primary Assembly 77138 na scaffold_137 unplaced-scaffold na na JASFZR010000099.1 <> na Primary Assembly 77012 na scaffold_138 unplaced-scaffold na na JASFZR010000111.1 <> na Primary Assembly 75371 na scaffold_139 unplaced-scaffold na na JASFZR010000020.1 <> na Primary Assembly 75001 na scaffold_140 unplaced-scaffold na na JASFZR010000093.1 <> na Primary Assembly 74239 na scaffold_141 unplaced-scaffold na na JASFZR010000051.1 <> na Primary Assembly 73727 na scaffold_142 unplaced-scaffold na na JASFZR010000160.1 <> na Primary Assembly 72832 na scaffold_143 unplaced-scaffold na na JASFZR010000031.1 <> na Primary Assembly 72530 na scaffold_144 unplaced-scaffold na na JASFZR010000106.1 <> na Primary Assembly 71483 na scaffold_145 unplaced-scaffold na na JASFZR010000146.1 <> na Primary Assembly 70181 na scaffold_146 unplaced-scaffold na na JASFZR010000061.1 <> na Primary Assembly 70108 na scaffold_147 unplaced-scaffold na na JASFZR010000100.1 <> na Primary Assembly 70000 na scaffold_148 unplaced-scaffold na na JASFZR010000118.1 <> na Primary Assembly 69613 na scaffold_149 unplaced-scaffold na na JASFZR010000151.1 <> na Primary Assembly 67541 na scaffold_150 unplaced-scaffold na na JASFZR010000039.1 <> na Primary Assembly 66908 na scaffold_151 unplaced-scaffold na na JASFZR010000124.1 <> na Primary Assembly 66000 na scaffold_152 unplaced-scaffold na na JASFZR010000054.1 <> na Primary Assembly 65496 na scaffold_153 unplaced-scaffold na na JASFZR010000157.1 <> na Primary Assembly 63605 na scaffold_154 unplaced-scaffold na na JASFZR010000060.1 <> na Primary Assembly 63318 na scaffold_155 unplaced-scaffold na na JASFZR010000148.1 <> na Primary Assembly 62448 na scaffold_156 unplaced-scaffold na na JASFZR010000059.1 <> na Primary Assembly 62000 na scaffold_157 unplaced-scaffold na na JASFZR010000022.1 <> na Primary Assembly 60972 na scaffold_158 unplaced-scaffold na na JASFZR010000071.1 <> na Primary Assembly 60763 na scaffold_159 unplaced-scaffold na na JASFZR010000143.1 <> na Primary Assembly 60647 na scaffold_160 unplaced-scaffold na na JASFZR010000117.1 <> na Primary Assembly 59828 na scaffold_161 unplaced-scaffold na na JASFZR010000077.1 <> na Primary Assembly 59470 na scaffold_162 unplaced-scaffold na na JASFZR010000113.1 <> na Primary Assembly 59013 na scaffold_163 unplaced-scaffold na na JASFZR010000063.1 <> na Primary Assembly 58610 na scaffold_164 unplaced-scaffold na na JASFZR010000085.1 <> na Primary Assembly 58292 na scaffold_165 unplaced-scaffold na na JASFZR010000038.1 <> na Primary Assembly 58125 na scaffold_166 unplaced-scaffold na na JASFZR010000064.1 <> na Primary Assembly 58000 na scaffold_167 unplaced-scaffold na na JASFZR010000025.1 <> na Primary Assembly 58000 na scaffold_168 unplaced-scaffold na na JASFZR010000089.1 <> na Primary Assembly 57713 na scaffold_169 unplaced-scaffold na na JASFZR010000155.1 <> na Primary Assembly 56099 na scaffold_170 unplaced-scaffold na na JASFZR010000066.1 <> na Primary Assembly 55774 na scaffold_171 unplaced-scaffold na na JASFZR010000158.1 <> na Primary Assembly 55227 na scaffold_172 unplaced-scaffold na na JASFZR010000090.1 <> na Primary Assembly 55012 na scaffold_173 unplaced-scaffold na na JASFZR010000030.1 <> na Primary Assembly 54887 na scaffold_174 unplaced-scaffold na na JASFZR010000095.1 <> na Primary Assembly 54858 na scaffold_175 unplaced-scaffold na na JASFZR010000145.1 <> na Primary Assembly 54460 na scaffold_176 unplaced-scaffold na na JASFZR010000104.1 <> na Primary Assembly 53339 na scaffold_177 unplaced-scaffold na na JASFZR010000019.1 <> na Primary Assembly 53040 na scaffold_178 unplaced-scaffold na na JASFZR010000087.1 <> na Primary Assembly 52879 na scaffold_179 unplaced-scaffold na na JASFZR010000048.1 <> na Primary Assembly 51237 na scaffold_180 unplaced-scaffold na na JASFZR010000094.1 <> na Primary Assembly 51000 na scaffold_181 unplaced-scaffold na na JASFZR010000140.1 <> na Primary Assembly 49983 na scaffold_182 unplaced-scaffold na na JASFZR010000056.1 <> na Primary Assembly 49937 na scaffold_183 unplaced-scaffold na na JASFZR010000136.1 <> na Primary Assembly 49297 na scaffold_184 unplaced-scaffold na na JASFZR010000137.1 <> na Primary Assembly 49261 na scaffold_185 unplaced-scaffold na na JASFZR010000058.1 <> na Primary Assembly 47437 na scaffold_186 unplaced-scaffold na na JASFZR010000036.1 <> na Primary Assembly 46013 na scaffold_187 unplaced-scaffold na na JASFZR010000114.1 <> na Primary Assembly 45452 na scaffold_188 unplaced-scaffold na na JASFZR010000091.1 <> na Primary Assembly 45002 na scaffold_189 unplaced-scaffold na na JASFZR010000029.1 <> na Primary Assembly 44212 na scaffold_190 unplaced-scaffold na na JASFZR010000070.1 <> na Primary Assembly 44130 na scaffold_191 unplaced-scaffold na na JASFZR010000149.1 <> na Primary Assembly 43787 na scaffold_192 unplaced-scaffold na na JASFZR010000068.1 <> na Primary Assembly 42780 na scaffold_193 unplaced-scaffold na na JASFZR010000135.1 <> na Primary Assembly 42073 na scaffold_194 unplaced-scaffold na na JASFZR010000073.1 <> na Primary Assembly 38484 na scaffold_195 unplaced-scaffold na na JASFZR010000144.1 <> na Primary Assembly 37701 na scaffold_196 unplaced-scaffold na na JASFZR010000053.1 <> na Primary Assembly 37450 na scaffold_197 unplaced-scaffold na na JASFZR010000112.1 <> na Primary Assembly 36455 na scaffold_198 unplaced-scaffold na na JASFZR010000105.1 <> na Primary Assembly 36335 na scaffold_199 unplaced-scaffold na na JASFZR010000044.1 <> na Primary Assembly 35908 na scaffold_200 unplaced-scaffold na na JASFZR010000024.1 <> na Primary Assembly 35843 na scaffold_201 unplaced-scaffold na na JASFZR010000072.1 <> na Primary Assembly 35716 na scaffold_202 unplaced-scaffold na na JASFZR010000126.1 <> na Primary Assembly 34691 na scaffold_203 unplaced-scaffold na na JASFZR010000032.1 <> na Primary Assembly 34031 na scaffold_204 unplaced-scaffold na na JASFZR010000125.1 <> na Primary Assembly 33314 na scaffold_205 unplaced-scaffold na na JASFZR010000084.1 <> na Primary Assembly 33054 na scaffold_206 unplaced-scaffold na na JASFZR010000103.1 <> na Primary Assembly 32572 na scaffold_207 unplaced-scaffold na na JASFZR010000037.1 <> na Primary Assembly 31260 na scaffold_208 unplaced-scaffold na na JASFZR010000069.1 <> na Primary Assembly 30844 na scaffold_209 unplaced-scaffold na na JASFZR010000141.1 <> na Primary Assembly 30841 na scaffold_210 unplaced-scaffold na na JASFZR010000052.1 <> na Primary Assembly 30200 na scaffold_211 unplaced-scaffold na na JASFZR010000131.1 <> na Primary Assembly 29274 na scaffold_212 unplaced-scaffold na na JASFZR010000081.1 <> na Primary Assembly 28976 na scaffold_213 unplaced-scaffold na na JASFZR010000130.1 <> na Primary Assembly 28943 na scaffold_214 unplaced-scaffold na na JASFZR010000075.1 <> na Primary Assembly 28843 na scaffold_215 unplaced-scaffold na na JASFZR010000134.1 <> na Primary Assembly 28226 na scaffold_216 unplaced-scaffold na na JASFZR010000092.1 <> na Primary Assembly 26460 na scaffold_217 unplaced-scaffold na na JASFZR010000150.1 <> na Primary Assembly 25145 na scaffold_218 unplaced-scaffold na na JASFZR010000062.1 <> na Primary Assembly 18653 na scaffold_219 unplaced-scaffold na na JASFZR010000101.1 <> na Primary Assembly 11000 na scaffold_220 unplaced-scaffold na na JASFZR010000107.1 <> na Primary Assembly 1000 na scaffold_33 unplaced-scaffold na na JASFZR010000033.1 <> na Primary Assembly 505918 na scaffold_34 unplaced-scaffold na na JASFZR010000096.1 <> na Primary Assembly 461904 na scaffold_53 unplaced-scaffold na na JASFZR010000049.1 <> na Primary Assembly 268341 na scaffold_67 unplaced-scaffold na na JASFZR010000028.1 <> na Primary Assembly 185226 na scaffold_73 unplaced-scaffold na na JASFZR010000080.1 <> na Primary Assembly 165760 na scaffold_75 unplaced-scaffold na na JASFZR010000116.1 <> na Primary Assembly 155151 na scaffold_78 unplaced-scaffold na na JASFZR010000083.1 <> na Primary Assembly 145000 na scaffold_79 unplaced-scaffold na na JASFZR010000119.1 <> na Primary Assembly 143315 na scaffold_80 unplaced-scaffold na na JASFZR010000076.1 <> na Primary Assembly 140558 na scaffold_81 unplaced-scaffold na na JASFZR010000139.1 <> na Primary Assembly 137559 na scaffold_82 unplaced-scaffold na na JASFZR010000046.1 <> na Primary Assembly 135490 na scaffold_83 unplaced-scaffold na na JASFZR010000120.1 <> na Primary Assembly 134892 na scaffold_84 unplaced-scaffold na na JASFZR010000123.1 <> na Primary Assembly 134287 na scaffold_86 unplaced-scaffold na na JASFZR010000082.1 <> na Primary Assembly 129565 na scaffold_87 unplaced-scaffold na na JASFZR010000122.1 <> na Primary Assembly 129517 na scaffold_88 unplaced-scaffold na na JASFZR010000115.1 <> na Primary Assembly 127637 na scaffold_89 unplaced-scaffold na na JASFZR010000042.1 <> na Primary Assembly 126036 na scaffold_90 unplaced-scaffold na na JASFZR010000023.1 <> na Primary Assembly 125000 na scaffold_91 unplaced-scaffold na na JASFZR010000110.1 <> na Primary Assembly 122695 na scaffold_92 unplaced-scaffold na na JASFZR010000121.1 <> na Primary Assembly 119737 na scaffold_94 unplaced-scaffold na na JASFZR010000078.1 <> na Primary Assembly 118461 na scaffold_95 unplaced-scaffold na na JASFZR010000156.1 <> na Primary Assembly 117224 na scaffold_98 unplaced-scaffold na na JASFZR010000041.1 <> na Primary Assembly 113329 na scaffold_99 unplaced-scaffold na na JASFZR010000109.1 <> na Primary Assembly 112353 na