# Assembly name: NHGRI_mPanTro3-v1.1-hic.freeze_alt # Organism name: Pan troglodytes (chimpanzee) # Isolate: AG18354 # Sex: male # Taxid: 9598 # BioSample: SAMN30216104 # BioProject: PRJNA916737 # Submitter: National Human Genome Research Institute, National Institutes of Health # Date: 2023-02-27 # Assembly type: alternate-pseudohaplotype # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAQQLO01 # Assembly method: Verkko v. 1.1 # Expected final version: no # Genome coverage: 70.0x # Sequencing technology: PacBio Sequel; Oxford Nanopore PromethION # GenBank assembly accession: GCA_028858805.1 # Linked assembly: GCA_028858775.1 (principal pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_028858815.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM054411.1 <> na Primary Assembly 233312453 na chr2p assembled-molecule 2A Chromosome CM054412.1 <> na Primary Assembly 126935796 na chr2q assembled-molecule 2B Chromosome CM054413.1 <> na Primary Assembly 140748209 na chr3 assembled-molecule 3 Chromosome CM054414.1 <> na Primary Assembly 200344605 na chr4 assembled-molecule 4 Chromosome CM054415.1 <> na Primary Assembly 193045004 na chr5 assembled-molecule 5 Chromosome CM054416.1 <> na Primary Assembly 178806421 na chr6 assembled-molecule 6 Chromosome CM054417.1 <> na Primary Assembly 180078662 na chr7 assembled-molecule 7 Chromosome CM054418.1 <> na Primary Assembly 174453150 na chr8 assembled-molecule 8 Chromosome CM054419.1 <> na Primary Assembly 163861427 na chr9 assembled-molecule 9 Chromosome CM054420.1 <> na Primary Assembly 121990338 na chr10 assembled-molecule 10 Chromosome CM054421.1 <> na Primary Assembly 146345972 na chr11 assembled-molecule 11 Chromosome CM054422.1 <> na Primary Assembly 136987529 na chr12 assembled-molecule 12 Chromosome CM054423.1 <> na Primary Assembly 140160298 na chr13 assembled-molecule 13 Chromosome CM054424.1 <> na Primary Assembly 103384584 na chr14 assembled-molecule 14 Chromosome CM054425.1 <> na Primary Assembly 102012127 na chr15 assembled-molecule 15 Chromosome CM054426.1 <> na Primary Assembly 97361126 na chr16 assembled-molecule 16 Chromosome CM054427.1 <> na Primary Assembly 100838580 na chr17 assembled-molecule 17 Chromosome CM054428.1 <> na Primary Assembly 98881500 na chr18 assembled-molecule 18 Chromosome CM054429.1 <> na Primary Assembly 85025117 na chr19 assembled-molecule 19 Chromosome CM054430.1 <> na Primary Assembly 73835649 na chr20 assembled-molecule 20 Chromosome CM054431.1 <> na Primary Assembly 78832678 na chr21 assembled-molecule 21 Chromosome CM054432.1 <> na Primary Assembly 47412730 na chr22 assembled-molecule 22 Chromosome CM054433.1 <> na Primary Assembly 52281434 na hap2-0000004 unplaced-scaffold na na JAQQLO010000001.1 <> na Primary Assembly 13942699 na hap2-0001529 unplaced-scaffold na na JAQQLO010000004.1 <> na Primary Assembly 1838786 na hap2-0001534 unplaced-scaffold na na JAQQLO010000010.1 <> na Primary Assembly 1304731 na hap2-0001539 unplaced-scaffold na na JAQQLO010000016.1 <> na Primary Assembly 3449131 na hap2-0001540 unplaced-scaffold na na JAQQLO010000017.1 <> na Primary Assembly 1227296 na hap2-0001562 unplaced-scaffold na na JAQQLO010000041.1 <> na Primary Assembly 6937319 na hap2-0001563 unplaced-scaffold na na JAQQLO010000042.1 <> na Primary Assembly 1730961 na hap2-0001571 unplaced-scaffold na na MU825373.1 <> na Primary Assembly 1169487 na hap2-0001572 unplaced-scaffold na na JAQQLO010000054.1 <> na Primary Assembly 48607 na hap2-0001573 unplaced-scaffold na na JAQQLO010000055.1 <> na Primary Assembly 48113 na hap2-0001574 unplaced-scaffold na na JAQQLO010000056.1 <> na Primary Assembly 87730 na hap2-0001575 unplaced-scaffold na na JAQQLO010000057.1 <> na Primary Assembly 47228 na hap2-0001576 unplaced-scaffold na na JAQQLO010000058.1 <> na Primary Assembly 63495 na hap2-0001577 unplaced-scaffold na na JAQQLO010000059.1 <> na Primary Assembly 40214 na hap2-0001578 unplaced-scaffold na na JAQQLO010000060.1 <> na Primary Assembly 70102 na hap2-0001579 unplaced-scaffold na na JAQQLO010000061.1 <> na Primary Assembly 42120 na hap2-0001580 unplaced-scaffold na na JAQQLO010000062.1 <> na Primary Assembly 44691 na hap2-0001581 unplaced-scaffold na na JAQQLO010000063.1 <> na Primary Assembly 17627 na hap2-0001582 unplaced-scaffold na na JAQQLO010000064.1 <> na Primary Assembly 13961 na hap2-0001583 unplaced-scaffold na na JAQQLO010000065.1 <> na Primary Assembly 54619 na hap2-0001584 unplaced-scaffold na na JAQQLO010000066.1 <> na Primary Assembly 71161 na hap2-0001585 unplaced-scaffold na na JAQQLO010000067.1 <> na Primary Assembly 318481 na hap2-0001586 unplaced-scaffold na na JAQQLO010000068.1 <> na Primary Assembly 107544 na hap2-0001587 unplaced-scaffold na na JAQQLO010000069.1 <> na Primary Assembly 349729 na hap2-0001588 unplaced-scaffold na na JAQQLO010000070.1 <> na Primary Assembly 257145 na hap2-0001589 unplaced-scaffold na na JAQQLO010000071.1 <> na Primary Assembly 234759 na hap2-0001590 unplaced-scaffold na na JAQQLO010000072.1 <> na Primary Assembly 46744 na hap2-0001591 unplaced-scaffold na na JAQQLO010000073.1 <> na Primary Assembly 67724 na hap2-0001592 unplaced-scaffold na na JAQQLO010000074.1 <> na Primary Assembly 48918 na hap2-0001593 unplaced-scaffold na na JAQQLO010000075.1 <> na Primary Assembly 69518 na hap2-0001594 unplaced-scaffold na na JAQQLO010000076.1 <> na Primary Assembly 70873 na hap2-0001595 unplaced-scaffold na na JAQQLO010000077.1 <> na Primary Assembly 56927 na hap2-0001596 unplaced-scaffold na na JAQQLO010000078.1 <> na Primary Assembly 38922 na hap2-0001597 unplaced-scaffold na na JAQQLO010000079.1 <> na Primary Assembly 32164 na hap2-0001598 unplaced-scaffold na na JAQQLO010000080.1 <> na Primary Assembly 72064 na hap2-0001599 unplaced-scaffold na na JAQQLO010000081.1 <> na Primary Assembly 49876 na hap2-0001600 unplaced-scaffold na na JAQQLO010000082.1 <> na Primary Assembly 35821 na hap2-0001601 unplaced-scaffold na na JAQQLO010000083.1 <> na Primary Assembly 32846 na hap2-0001602 unplaced-scaffold na na JAQQLO010000084.1 <> na Primary Assembly 64230 na hap2-0001603 unplaced-scaffold na na JAQQLO010000085.1 <> na Primary Assembly 61555 na hap2-0001604 unplaced-scaffold na na JAQQLO010000086.1 <> na Primary Assembly 103496 na hap2-0001605 unplaced-scaffold na na JAQQLO010000087.1 <> na Primary Assembly 24810 na hap2-0001606 unplaced-scaffold na na JAQQLO010000088.1 <> na Primary Assembly 129878 na hap2-0001607 unplaced-scaffold na na JAQQLO010000089.1 <> na Primary Assembly 345915 na hap2-0001608 unplaced-scaffold na na JAQQLO010000090.1 <> na Primary Assembly 50588 na hap2-0001609 unplaced-scaffold na na JAQQLO010000091.1 <> na Primary Assembly 103646 na hap2-0001610 unplaced-scaffold na na JAQQLO010000092.1 <> na Primary Assembly 68296 na hap2-0001611 unplaced-scaffold na na JAQQLO010000093.1 <> na Primary Assembly 144213 na hap2-0001612 unplaced-scaffold na na JAQQLO010000094.1 <> na Primary Assembly 62729 na hap2-0001613 unplaced-scaffold na na JAQQLO010000095.1 <> na Primary Assembly 184599 na hap2-0001614 unplaced-scaffold na na JAQQLO010000096.1 <> na Primary Assembly 34788 na hap2-0001615 unplaced-scaffold na na JAQQLO010000097.1 <> na Primary Assembly 36045 na hap2-0001616 unplaced-scaffold na na JAQQLO010000098.1 <> na Primary Assembly 38361 na hap2-0001617 unplaced-scaffold na na JAQQLO010000099.1 <> na Primary Assembly 52558 na hap2-0001618 unplaced-scaffold na na JAQQLO010000100.1 <> na Primary Assembly 44424 na hap2-0001619 unplaced-scaffold na na JAQQLO010000101.1 <> na Primary Assembly 683613 na hap2-0001620 unplaced-scaffold na na JAQQLO010000102.1 <> na Primary Assembly 81235 na hap2-0001621 unplaced-scaffold na na JAQQLO010000103.1 <> na Primary Assembly 86159 na hap2-0001622 unplaced-scaffold na na JAQQLO010000104.1 <> na Primary Assembly 42400 na hap2-0001623 unplaced-scaffold na na JAQQLO010000105.1 <> na Primary Assembly 133895 na hap2-0001624 unplaced-scaffold na na JAQQLO010000106.1 <> na Primary Assembly 68672 na hap2-0001627 unplaced-scaffold na na JAQQLO010000107.1 <> na Primary Assembly 113548 na hap2-0001628 unplaced-scaffold na na JAQQLO010000108.1 <> na Primary Assembly 24018 na hap2-0001629 unplaced-scaffold na na JAQQLO010000109.1 <> na Primary Assembly 25271 na hap2-0001630 unplaced-scaffold na na JAQQLO010000110.1 <> na Primary Assembly 23236 na hap2-0001631 unplaced-scaffold na na JAQQLO010000111.1 <> na Primary Assembly 43815 na hap2-0001632 unplaced-scaffold na na JAQQLO010000112.1 <> na Primary Assembly 44932 na hap2-0001633 unplaced-scaffold na na JAQQLO010000113.1 <> na Primary Assembly 49328 na hap2-0001634 unplaced-scaffold na na JAQQLO010000114.1 <> na Primary Assembly 73417 na hap2-0001635 unplaced-scaffold na na JAQQLO010000115.1 <> na Primary Assembly 35069 na hap2-0001636 unplaced-scaffold na na JAQQLO010000116.1 <> na Primary Assembly 13498 na hap2-0001637 unplaced-scaffold na na JAQQLO010000117.1 <> na Primary Assembly 77486 na hap2-0001639 unplaced-scaffold na na JAQQLO010000118.1 <> na Primary Assembly 36457 na hap2-0001640 unplaced-scaffold na na JAQQLO010000119.1 <> na Primary Assembly 16953 na hap2-0001641 unplaced-scaffold na na JAQQLO010000120.1 <> na Primary Assembly 36075 na hap2-0001642 unplaced-scaffold na na JAQQLO010000121.1 <> na Primary Assembly 67754 na hap2-0001643 unplaced-scaffold na na JAQQLO010000122.1 <> na Primary Assembly 31756 na hap2-0001644 unplaced-scaffold na na JAQQLO010000123.1 <> na Primary Assembly 66189 na hap2-0001645 unplaced-scaffold na na JAQQLO010000124.1 <> na Primary Assembly 43388 na hap2-0001646 unplaced-scaffold na na JAQQLO010000125.1 <> na Primary Assembly 53304 na hap2-0001647 unplaced-scaffold na na JAQQLO010000126.1 <> na Primary Assembly 93803 na hap2-0001648 unplaced-scaffold na na JAQQLO010000127.1 <> na Primary Assembly 109523 na hap2-0001649 unplaced-scaffold na na JAQQLO010000128.1 <> na Primary Assembly 34635 na hap2-0001650 unplaced-scaffold na na JAQQLO010000129.1 <> na Primary Assembly 24969 na hap2-0001651 unplaced-scaffold na na JAQQLO010000130.1 <> na Primary Assembly 76289 na hap2-0001652 unplaced-scaffold na na JAQQLO010000131.1 <> na Primary Assembly 37384 na hap2-0001653 unplaced-scaffold na na JAQQLO010000132.1 <> na Primary Assembly 35421 na hap2-0001654 unplaced-scaffold na na JAQQLO010000133.1 <> na Primary Assembly 50530 na hap2-0001655 unplaced-scaffold na na JAQQLO010000134.1 <> na Primary Assembly 46616 na hap2-0001656 unplaced-scaffold na na JAQQLO010000135.1 <> na Primary Assembly 47776 na hap2-0001657 unplaced-scaffold na na JAQQLO010000136.1 <> na Primary Assembly 111056 na hap2-0001658 unplaced-scaffold na na JAQQLO010000137.1 <> na Primary Assembly 8890 na hap2-0001659 unplaced-scaffold na na JAQQLO010000138.1 <> na Primary Assembly 28240 na hap2-0001660 unplaced-scaffold na na JAQQLO010000139.1 <> na Primary Assembly 11194 na hap2-0001661 unplaced-scaffold na na JAQQLO010000140.1 <> na Primary Assembly 25938 na hap2-0001662 unplaced-scaffold na na JAQQLO010000141.1 <> na Primary Assembly 43711 na