# Assembly name: bColStr4.hap1 # Organism name: Colius striatus (speckled mousebird) # Isolate: bColStr4 # Sex: female # Taxid: 57412 # BioSample: SAMN33339572 # BioProject: PRJNA936149 # Submitter: Vertebrate Genomes Project # Date: 2023-02-24 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JARBXP01 # Assembly method: HiFiasm + trio phasing v. 0.16.1 + galaxy2; Bionano Solve v. 3.7; salsa v. 2.3 + galaxy2 # Expected final version: no # Genome coverage: 28.91x # Sequencing technology: PacBio Sequel II HiFi; Bionano DLS; Arima Hi-C v2 # GenBank assembly accession: GCA_028858725.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_028858735.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM054345.1 <> na Primary Assembly 206588619 na SUPER_2 assembled-molecule 2 Chromosome CM054346.1 <> na Primary Assembly 122590939 na SUPER_3 assembled-molecule 3 Chromosome CM054347.1 <> na Primary Assembly 99866656 na SUPER_4 assembled-molecule 4 Chromosome CM054348.1 <> na Primary Assembly 97552025 na SUPER_5 assembled-molecule 5 Chromosome CM054349.1 <> na Primary Assembly 59131021 na SUPER_6 assembled-molecule 6 Chromosome CM054350.1 <> na Primary Assembly 47671338 na SUPER_7 assembled-molecule 7 Chromosome CM054351.1 <> na Primary Assembly 43798297 na SUPER_8 assembled-molecule 8 Chromosome CM054352.1 <> na Primary Assembly 39243326 na SUPER_9 assembled-molecule 9 Chromosome CM054353.1 <> na Primary Assembly 35251630 na SUPER_10 assembled-molecule 10 Chromosome CM054354.1 <> na Primary Assembly 34456810 na SUPER_11 assembled-molecule 11 Chromosome CM054355.1 <> na Primary Assembly 30181140 na SUPER_12 assembled-molecule 12 Chromosome CM054356.1 <> na Primary Assembly 28603071 na SUPER_13 assembled-molecule 13 Chromosome CM054357.1 <> na Primary Assembly 23139417 na SUPER_14 assembled-molecule 14 Chromosome CM054358.1 <> na Primary Assembly 22975093 na SUPER_15 assembled-molecule 15 Chromosome CM054359.1 <> na Primary Assembly 22727674 na SUPER_16 assembled-molecule 16 Chromosome CM054360.1 <> na Primary Assembly 17800485 na SUPER_17 assembled-molecule 17 Chromosome CM054361.1 <> na Primary Assembly 17044399 na SUPER_18 assembled-molecule 18 Chromosome CM054362.1 <> na Primary Assembly 12955907 na SUPER_19 assembled-molecule 19 Chromosome CM054363.1 <> na Primary Assembly 12933062 na SUPER_20 assembled-molecule 20 Chromosome CM054364.1 <> na Primary Assembly 12470069 na SUPER_21 assembled-molecule 21 Chromosome CM054365.1 <> na Primary Assembly 10365338 na SUPER_22 assembled-molecule 22 Chromosome CM054366.1 <> na Primary Assembly 9271640 na SUPER_23 assembled-molecule 23 Chromosome CM054367.1 <> na Primary Assembly 7213672 na SUPER_24 assembled-molecule 24 Chromosome CM054368.1 <> na Primary Assembly 6546072 na SUPER_25 assembled-molecule 25 Chromosome CM054369.1 <> na Primary Assembly 5816851 na SUPER_26 assembled-molecule 26 Chromosome CM054370.1 <> na Primary Assembly 4187400 na SUPER_27 assembled-molecule 27 Chromosome CM054371.1 <> na Primary Assembly 3703551 na SUPER_28 assembled-molecule 28 Chromosome CM054372.1 <> na Primary Assembly 3354660 na SUPER_29 assembled-molecule 29 Chromosome CM054373.1 <> na Primary Assembly 1997127 na SUPER_30 assembled-molecule 30 Chromosome CM054374.1 <> na Primary Assembly 867119 na SUPER_W assembled-molecule W Chromosome CM054375.1 <> na Primary Assembly 42315177 na SUPER_1_unloc_1 unlocalized-scaffold 1 Chromosome JARBXP010000002.1 <> na Primary Assembly 52934 na SUPER_3_unloc_1 unlocalized-scaffold 3 Chromosome JARBXP010000005.1 <> na Primary Assembly 365620 na SUPER_17_unloc_1 unlocalized-scaffold 17 Chromosome JARBXP010000021.1 <> na Primary Assembly 68794 na SUPER_17_unloc_2 unlocalized-scaffold 17 Chromosome JARBXP010000022.1 <> na Primary Assembly 67460 na SUPER_17_unloc_3 unlocalized-scaffold 17 Chromosome JARBXP010000023.1 <> na Primary Assembly 67179 na SUPER_22_unloc_1 unlocalized-scaffold 22 Chromosome JARBXP010000029.1 <> na Primary Assembly 39156 na SUPER_26_unloc_1 unlocalized-scaffold 26 Chromosome JARBXP010000034.1 <> na Primary Assembly 197472 na SUPER_26_unloc_2 unlocalized-scaffold 26 Chromosome JARBXP010000035.1 <> na Primary Assembly 104912 na scaffold_100 unplaced-scaffold na na JARBXP010000177.1 <> na Primary Assembly 71085 na scaffold_101 unplaced-scaffold na na JARBXP010000057.1 <> na Primary Assembly 69772 na scaffold_105 unplaced-scaffold na na JARBXP010000090.1 <> na Primary Assembly 65594 na scaffold_106 unplaced-scaffold na na JARBXP010000128.1 <> na Primary Assembly 56964 na scaffold_109 unplaced-scaffold na na JARBXP010000067.1 <> na Primary Assembly 52588 na scaffold_110 unplaced-scaffold na na JARBXP010000125.1 <> na Primary Assembly 52366 na scaffold_111 unplaced-scaffold na na JARBXP010000065.1 <> na Primary Assembly 50638 na scaffold_112 unplaced-scaffold na na JARBXP010000152.1 <> na Primary Assembly 50301 na scaffold_113 unplaced-scaffold na na JARBXP010000078.1 <> na Primary Assembly 49552 na scaffold_114 unplaced-scaffold na na JARBXP010000062.1 <> na Primary Assembly 49280 na scaffold_116 unplaced-scaffold na na JARBXP010000099.1 <> na Primary Assembly 48350 na scaffold_117 unplaced-scaffold na na JARBXP010000182.1 <> na Primary Assembly 47873 na scaffold_118 unplaced-scaffold na na JARBXP010000189.1 <> na Primary Assembly 46063 na scaffold_119 unplaced-scaffold na na JARBXP010000092.1 <> na Primary Assembly 45962 na scaffold_120 unplaced-scaffold na na JARBXP010000041.1 <> na Primary Assembly 45931 na scaffold_121 unplaced-scaffold na na JARBXP010000171.1 <> na Primary Assembly 45507 na scaffold_122 unplaced-scaffold na na JARBXP010000068.1 <> na Primary Assembly 45154 na scaffold_123 unplaced-scaffold na na JARBXP010000167.1 <> na Primary Assembly 44801 na scaffold_124 unplaced-scaffold na na JARBXP010000153.1 <> na Primary Assembly 44584 na scaffold_125 unplaced-scaffold na na JARBXP010000105.1 <> na Primary Assembly 44364 na scaffold_126 unplaced-scaffold na na JARBXP010000160.1 <> na Primary Assembly 44099 na scaffold_127 unplaced-scaffold na na JARBXP010000051.1 <> na Primary Assembly 43682 na scaffold_128 unplaced-scaffold na na JARBXP010000183.1 <> na Primary Assembly 43158 na scaffold_129 unplaced-scaffold na na JARBXP010000113.1 <> na Primary Assembly 43153 na scaffold_130 unplaced-scaffold na na JARBXP010000111.1 <> na Primary Assembly 42234 na scaffold_131 unplaced-scaffold na na JARBXP010000040.1 <> na Primary Assembly 42085 na scaffold_132 unplaced-scaffold na na JARBXP010000184.1 <> na Primary Assembly 42083 na scaffold_133 unplaced-scaffold na na JARBXP010000046.1 <> na Primary Assembly 41705 na scaffold_134 unplaced-scaffold na na JARBXP010000157.1 <> na Primary Assembly 41059 na scaffold_135 unplaced-scaffold na na JARBXP010000080.1 <> na Primary Assembly 41035 na scaffold_136 unplaced-scaffold na na JARBXP010000050.1 <> na Primary Assembly 40684 na scaffold_137 unplaced-scaffold na na JARBXP010000129.1 <> na Primary Assembly 40487 na scaffold_138 unplaced-scaffold na na JARBXP010000140.1 <> na Primary Assembly 40398 na scaffold_139 unplaced-scaffold na na JARBXP010000045.1 <> na Primary Assembly 40386 na scaffold_140 unplaced-scaffold na na JARBXP010000121.1 <> na Primary Assembly 39841 na scaffold_141 unplaced-scaffold na na JARBXP010000073.1 <> na Primary Assembly 39416 na scaffold_143 unplaced-scaffold na na JARBXP010000054.1 <> na Primary Assembly 39012 na scaffold_144 unplaced-scaffold na na JARBXP010000137.1 <> na Primary Assembly 38958 na scaffold_145 unplaced-scaffold na na JARBXP010000176.1 <> na Primary Assembly 38781 na scaffold_146 unplaced-scaffold na na JARBXP010000085.1 <> na Primary Assembly 37522 na scaffold_147 unplaced-scaffold na na JARBXP010000130.1 <> na Primary Assembly 37474 na scaffold_148 unplaced-scaffold na na JARBXP010000146.1 <> na Primary Assembly 37404 na scaffold_149 unplaced-scaffold na na JARBXP010000181.1 <> na Primary Assembly 37243 na scaffold_150 unplaced-scaffold na na JARBXP010000061.1 <> na Primary Assembly 37229 na scaffold_151 unplaced-scaffold na na JARBXP010000149.1 <> na Primary Assembly 37184 na scaffold_152 unplaced-scaffold na na JARBXP010000077.1 <> na Primary Assembly 36916 na scaffold_153 unplaced-scaffold na na JARBXP010000186.1 <> na Primary Assembly 36881 na scaffold_154 unplaced-scaffold na na JARBXP010000084.1 <> na Primary Assembly 36747 na scaffold_155 unplaced-scaffold na na JARBXP010000179.1 <> na Primary Assembly 36641 na scaffold_156 unplaced-scaffold na na JARBXP010000083.1 <> na Primary Assembly 36451 na scaffold_157 unplaced-scaffold na na JARBXP010000047.1 <> na Primary Assembly 36097 na scaffold_158 unplaced-scaffold na na JARBXP010000096.1 <> na Primary Assembly 35584 na scaffold_159 unplaced-scaffold na na JARBXP010000172.1 <> na Primary Assembly 35143 na scaffold_160 unplaced-scaffold na na JARBXP010000145.1 <> na Primary Assembly 34931 na scaffold_161 unplaced-scaffold na na JARBXP010000102.1 <> na Primary Assembly 34780 na scaffold_162 unplaced-scaffold na na JARBXP010000142.1 <> na Primary Assembly 34670 na scaffold_163 unplaced-scaffold na na JARBXP010000089.1 <> na Primary Assembly 34108 na scaffold_164 unplaced-scaffold na na JARBXP010000109.1 <> na Primary Assembly 33898 na scaffold_165 unplaced-scaffold na na JARBXP010000060.1 <> na Primary Assembly 33876 na scaffold_166 unplaced-scaffold na na JARBXP010000088.1 <> na Primary Assembly 33827 na scaffold_167 unplaced-scaffold na na JARBXP010000049.1 <> na Primary Assembly 33723 na scaffold_168 unplaced-scaffold na na JARBXP010000116.1 <> na Primary Assembly 33498 na scaffold_169 unplaced-scaffold na na JARBXP010000185.1 <> na Primary Assembly 32621 na scaffold_170 unplaced-scaffold na na JARBXP010000091.1 <> na Primary Assembly 32361 na scaffold_171 unplaced-scaffold na na JARBXP010000187.1 <> na Primary Assembly 32107 na scaffold_172 unplaced-scaffold na na JARBXP010000115.1 <> na Primary Assembly 31867 na scaffold_173 unplaced-scaffold na na JARBXP010000053.1 <> na Primary Assembly 31780 na scaffold_174 unplaced-scaffold na na JARBXP010000122.1 <> na Primary Assembly 31653 na scaffold_175 unplaced-scaffold na na JARBXP010000175.1 <> na Primary Assembly 31349 na scaffold_176 unplaced-scaffold na na JARBXP010000134.1 <> na Primary Assembly 31171 na scaffold_177 unplaced-scaffold na na JARBXP010000044.1 <> na Primary Assembly 31117 na scaffold_178 unplaced-scaffold na na JARBXP010000112.1 <> na Primary Assembly 31079 na scaffold_179 unplaced-scaffold na na JARBXP010000069.1 <> na Primary Assembly 30663 na scaffold_180 unplaced-scaffold na na JARBXP010000120.1 <> na Primary Assembly 30658 na scaffold_181 unplaced-scaffold na na JARBXP010000169.1 <> na Primary Assembly 29970 na scaffold_182 unplaced-scaffold na na JARBXP010000079.1 <> na Primary Assembly 29773 na scaffold_183 unplaced-scaffold na na JARBXP010000163.1 <> na Primary Assembly 29714 na scaffold_184 unplaced-scaffold na na JARBXP010000164.1 <> na Primary Assembly 29666 na scaffold_185 unplaced-scaffold na na JARBXP010000081.1 <> na Primary Assembly 28784 na scaffold_186 unplaced-scaffold na na JARBXP010000058.1 <> na Primary Assembly 28642 na scaffold_187 unplaced-scaffold na na JARBXP010000143.1 <> na Primary Assembly 28348 na scaffold_188 unplaced-scaffold na na JARBXP010000117.1 <> na Primary Assembly 28248 na scaffold_189 unplaced-scaffold na na JARBXP010000052.1 <> na Primary Assembly 28236 na scaffold_190 unplaced-scaffold na na JARBXP010000095.1 <> na Primary Assembly 28027 na scaffold_191 unplaced-scaffold na na JARBXP010000178.1 <> na Primary Assembly 27859 na scaffold_192 unplaced-scaffold na na JARBXP010000093.1 <> na Primary Assembly 27810 na scaffold_193 unplaced-scaffold na na JARBXP010000162.1 <> na Primary Assembly 27734 na scaffold_194 unplaced-scaffold na na JARBXP010000098.1 <> na Primary Assembly 27675 na scaffold_195 unplaced-scaffold na na JARBXP010000173.1 <> na Primary Assembly 27630 na scaffold_196 unplaced-scaffold na na JARBXP010000076.1 <> na Primary Assembly 27568 na scaffold_197 unplaced-scaffold na na JARBXP010000141.1 <> na Primary Assembly 27546 na scaffold_198 unplaced-scaffold na na JARBXP010000136.1 <> na Primary Assembly 27344 na scaffold_199 unplaced-scaffold na na JARBXP010000066.1 <> na Primary Assembly 27048 na scaffold_200 unplaced-scaffold na na JARBXP010000048.1 <> na Primary Assembly 26764 na scaffold_201 unplaced-scaffold na na JARBXP010000097.1 <> na Primary Assembly 26751 na scaffold_202 unplaced-scaffold na na JARBXP010000151.1 <> na Primary Assembly 26686 na scaffold_203 unplaced-scaffold na na JARBXP010000055.1 <> na Primary Assembly 26677 na scaffold_204 unplaced-scaffold na na JARBXP010000150.1 <> na Primary Assembly 26606 na scaffold_205 unplaced-scaffold na na JARBXP010000108.1 <> na Primary Assembly 26539 na scaffold_206 unplaced-scaffold na na JARBXP010000133.1 <> na Primary Assembly 25916 na scaffold_207 unplaced-scaffold na na JARBXP010000059.1 <> na Primary Assembly 25058 na scaffold_208 unplaced-scaffold na na JARBXP010000094.1 <> na Primary Assembly 25012 na scaffold_209 unplaced-scaffold na na JARBXP010000168.1 <> na Primary Assembly 24037 na scaffold_210 unplaced-scaffold na na JARBXP010000075.1 <> na Primary Assembly 23642 na scaffold_211 unplaced-scaffold na na JARBXP010000155.1 <> na Primary Assembly 23510 na scaffold_212 unplaced-scaffold na na JARBXP010000106.1 <> na Primary Assembly 23021 na scaffold_213 unplaced-scaffold na na JARBXP010000154.1 <> na Primary Assembly 22464 na scaffold_214 unplaced-scaffold na na JARBXP010000101.1 <> na Primary Assembly 22122 na scaffold_215 unplaced-scaffold na na JARBXP010000161.1 <> na Primary Assembly 21750 na scaffold_216 unplaced-scaffold na na JARBXP010000118.1 <> na Primary Assembly 21329 na scaffold_217 unplaced-scaffold na na JARBXP010000180.1 <> na Primary Assembly 20908 na scaffold_218 unplaced-scaffold na na JARBXP010000087.1 <> na Primary Assembly 20896 na scaffold_219 unplaced-scaffold na na JARBXP010000132.1 <> na Primary Assembly 20181 na scaffold_220 unplaced-scaffold na na JARBXP010000138.1 <> na Primary Assembly 18989 na scaffold_221 unplaced-scaffold na na JARBXP010000174.1 <> na Primary Assembly 18684 na scaffold_222 unplaced-scaffold na na JARBXP010000119.1 <> na Primary Assembly 18450 na scaffold_223 unplaced-scaffold na na JARBXP010000043.1 <> na Primary Assembly 16873 na scaffold_224 unplaced-scaffold na na JARBXP010000110.1 <> na Primary Assembly 16755 na scaffold_225 unplaced-scaffold na na JARBXP010000166.1 <> na Primary Assembly 15396 na scaffold_226 unplaced-scaffold na na JARBXP010000086.1 <> na Primary Assembly 14693 na scaffold_227 unplaced-scaffold na na JARBXP010000070.1 <> na Primary Assembly 12990 na scaffold_34 unplaced-scaffold na na JARBXP010000124.1 <> na Primary Assembly 3611914 na scaffold_35 unplaced-scaffold na na JARBXP010000165.1 <> na Primary Assembly 3146529 na scaffold_36 unplaced-scaffold na na JARBXP010000114.1 <> na Primary Assembly 2779323 na scaffold_37 unplaced-scaffold na na JARBXP010000170.1 <> na Primary Assembly 2699708 na scaffold_38 unplaced-scaffold na na JARBXP010000071.1 <> na Primary Assembly 2639154 na scaffold_40 unplaced-scaffold na na JARBXP010000056.1 <> na Primary Assembly 2465505 na scaffold_43 unplaced-scaffold na na JARBXP010000064.1 <> na Primary Assembly 1919763 na scaffold_44 unplaced-scaffold na na JARBXP010000158.1 <> na Primary Assembly 1882691 na scaffold_45 unplaced-scaffold na na JARBXP010000072.1 <> na Primary Assembly 1791432 na scaffold_46 unplaced-scaffold na na JARBXP010000123.1 <> na Primary Assembly 1742421 na scaffold_47 unplaced-scaffold na na JARBXP010000188.1 <> na Primary Assembly 1594039 na scaffold_48 unplaced-scaffold na na JARBXP010000127.1 <> na Primary Assembly 1592523 na scaffold_54 unplaced-scaffold na na JARBXP010000131.1 <> na Primary Assembly 971453 na scaffold_55 unplaced-scaffold na na JARBXP010000103.1 <> na Primary Assembly 966858 na scaffold_56 unplaced-scaffold na na JARBXP010000159.1 <> na Primary Assembly 922348 na scaffold_59 unplaced-scaffold na na JARBXP010000126.1 <> na Primary Assembly 784747 na scaffold_60 unplaced-scaffold na na JARBXP010000139.1 <> na Primary Assembly 774221 na scaffold_63 unplaced-scaffold na na JARBXP010000042.1 <> na Primary Assembly 704152 na scaffold_65 unplaced-scaffold na na JARBXP010000063.1 <> na Primary Assembly 682570 na scaffold_68 unplaced-scaffold na na JARBXP010000135.1 <> na Primary Assembly 568591 na scaffold_76 unplaced-scaffold na na JARBXP010000100.1 <> na Primary Assembly 329315 na scaffold_79 unplaced-scaffold na na JARBXP010000147.1 <> na Primary Assembly 266293 na scaffold_84 unplaced-scaffold na na JARBXP010000148.1 <> na Primary Assembly 190752 na scaffold_85 unplaced-scaffold na na JARBXP010000082.1 <> na Primary Assembly 163092 na scaffold_86 unplaced-scaffold na na JARBXP010000107.1 <> na Primary Assembly 151495 na scaffold_93 unplaced-scaffold na na JARBXP010000144.1 <> na Primary Assembly 97696 na scaffold_94 unplaced-scaffold na na JARBXP010000104.1 <> na Primary Assembly 96045 na scaffold_96 unplaced-scaffold na na JARBXP010000156.1 <> na Primary Assembly 84982 na scaffold_97 unplaced-scaffold na na JARBXP010000074.1 <> na Primary Assembly 78732 na