# Assembly name: mEreDor1.pri # Organism name: Erethizon dorsatum (North American porcupine) # Isolate: mEreDor1 # Sex: male # Taxid: 34844 # BioSample: SAMN32359106 # BioProject: PRJNA915121 # Submitter: Vertebrate Genomes Project # Date: 2023-02-06 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAQMCO01 # Assembly method: FALCON v. 1.8.1; FALCON unzip v. 1.3.7; purge_dups v. 1.2.5; scaff10X v. 2.0.3; salsa v. 2.2; gcpp v. 2.0.2; merfin v. 1.0; freebayes v. 1.3.1; gEVAL manual curation v. 2021-11-19; VGP Pipeline v. 1.7 # Expected final version: no # Genome coverage: 115.21x # Sequencing technology: PacBio Sequel II CLR; 10X Gemonics linked reads; Arima Hi-C v1; Illumina DNASeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_028451465.1 # Linked assembly: GCA_028500835.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_028451575.1 Primary Assembly ## GCA_028451585.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM051822.1 <> na Primary Assembly 168646601 na SUPER_2 assembled-molecule 2 Chromosome CM051823.1 <> na Primary Assembly 164614973 na SUPER_3 assembled-molecule 3 Chromosome CM051824.1 <> na Primary Assembly 159691241 na SUPER_4 assembled-molecule 4 Chromosome CM051825.1 <> na Primary Assembly 151488396 na SUPER_5 assembled-molecule 5 Chromosome CM051826.1 <> na Primary Assembly 140564352 na SUPER_6 assembled-molecule 6 Chromosome CM051827.1 <> na Primary Assembly 134781400 na SUPER_7 assembled-molecule 7 Chromosome CM051828.1 <> na Primary Assembly 132852911 na SUPER_8 assembled-molecule 8 Chromosome CM051829.1 <> na Primary Assembly 127995937 na SUPER_9 assembled-molecule 9 Chromosome CM051830.1 <> na Primary Assembly 127610041 na SUPER_10 assembled-molecule 10 Chromosome CM051831.1 <> na Primary Assembly 126325934 na SUPER_11 assembled-molecule 11 Chromosome CM051832.1 <> na Primary Assembly 119278842 na SUPER_12 assembled-molecule 12 Chromosome CM051833.1 <> na Primary Assembly 117539099 na SUPER_13 assembled-molecule 13 Chromosome CM051834.1 <> na Primary Assembly 116394199 na SUPER_14 assembled-molecule 14 Chromosome CM051835.1 <> na Primary Assembly 109038093 na SUPER_15 assembled-molecule 15 Chromosome CM051836.1 <> na Primary Assembly 100200526 na SUPER_16 assembled-molecule 16 Chromosome CM051837.1 <> na Primary Assembly 89268738 na SUPER_17 assembled-molecule 17 Chromosome CM051838.1 <> na Primary Assembly 85312166 na SUPER_18 assembled-molecule 18 Chromosome CM051839.1 <> na Primary Assembly 52509398 na SUPER_19 assembled-molecule 19 Chromosome CM051840.1 <> na Primary Assembly 31273747 na SUPER_20 assembled-molecule 20 Chromosome CM051841.1 <> na Primary Assembly 18855288 na SUPER_X assembled-molecule X Chromosome CM051842.1 <> na Primary Assembly 142241837 na SUPER_Y assembled-molecule Y Chromosome CM051843.1 <> na Primary Assembly 7909422 na SUPER_18_unloc_1 unlocalized-scaffold 18 Chromosome JAQMCO010000018.1 <> na Primary Assembly 347982 na SUPER_X_unloc_1 unlocalized-scaffold X Chromosome JAQMCO010000024.1 <> na Primary Assembly 234482 na SUPER_Y_unloc_1 unlocalized-scaffold Y Chromosome JAQMCO010000026.1 <> na Primary Assembly 1328623 na scaffold_108_ctg1 unplaced-scaffold na na JAQMCO010000027.1 <> na Primary Assembly 519441 na scaffold_115_ctg1 unplaced-scaffold na na JAQMCO010000028.1 <> na Primary Assembly 411927 na scaffold_128_ctg1 unplaced-scaffold na na JAQMCO010000029.1 <> na Primary Assembly 198598 na scaffold_129_ctg1 unplaced-scaffold na na JAQMCO010000030.1 <> na Primary Assembly 195887 na scaffold_130_ctg1 unplaced-scaffold na na JAQMCO010000031.1 <> na Primary Assembly 193186 na scaffold_134_ctg1 unplaced-scaffold na na JAQMCO010000032.1 <> na Primary Assembly 164608 na scaffold_135_ctg1 unplaced-scaffold na na JAQMCO010000033.1 <> na Primary Assembly 153482 na scaffold_136_ctg1 unplaced-scaffold na na JAQMCO010000034.1 <> na Primary Assembly 152645 na scaffold_137_ctg1 unplaced-scaffold na na JAQMCO010000035.1 <> na Primary Assembly 144549 na scaffold_139_ctg1 unplaced-scaffold na na JAQMCO010000036.1 <> na Primary Assembly 121933 na scaffold_141_ctg1 unplaced-scaffold na na JAQMCO010000037.1 <> na Primary Assembly 99124 na scaffold_142_ctg1 unplaced-scaffold na na JAQMCO010000038.1 <> na Primary Assembly 96479 na scaffold_144_ctg1 unplaced-scaffold na na JAQMCO010000039.1 <> na Primary Assembly 93932 na scaffold_145_ctg1 unplaced-scaffold na na JAQMCO010000040.1 <> na Primary Assembly 93285 na scaffold_146_ctg1 unplaced-scaffold na na JAQMCO010000041.1 <> na Primary Assembly 92769 na scaffold_147_ctg1 unplaced-scaffold na na JAQMCO010000042.1 <> na Primary Assembly 86145 na scaffold_148_ctg1 unplaced-scaffold na na JAQMCO010000043.1 <> na Primary Assembly 82112 na scaffold_149_ctg1 unplaced-scaffold na na JAQMCO010000044.1 <> na Primary Assembly 78861 na scaffold_150_ctg1 unplaced-scaffold na na JAQMCO010000045.1 <> na Primary Assembly 77054 na scaffold_151_ctg1 unplaced-scaffold na na JAQMCO010000046.1 <> na Primary Assembly 76002 na scaffold_152_ctg1 unplaced-scaffold na na JAQMCO010000047.1 <> na Primary Assembly 74871 na scaffold_153_ctg1 unplaced-scaffold na na JAQMCO010000048.1 <> na Primary Assembly 72373 na scaffold_154_ctg1 unplaced-scaffold na na JAQMCO010000049.1 <> na Primary Assembly 71086 na scaffold_155_ctg1 unplaced-scaffold na na JAQMCO010000050.1 <> na Primary Assembly 67321 na scaffold_156_ctg1 unplaced-scaffold na na JAQMCO010000051.1 <> na Primary Assembly 64851 na scaffold_157_ctg1 unplaced-scaffold na na JAQMCO010000052.1 <> na Primary Assembly 62985 na scaffold_158_ctg1 unplaced-scaffold na na JAQMCO010000053.1 <> na Primary Assembly 61318 na scaffold_159_ctg1 unplaced-scaffold na na JAQMCO010000054.1 <> na Primary Assembly 58286 na scaffold_160_ctg1 unplaced-scaffold na na JAQMCO010000055.1 <> na Primary Assembly 57351 na scaffold_161_ctg1 unplaced-scaffold na na JAQMCO010000056.1 <> na Primary Assembly 55227 na scaffold_162_ctg1 unplaced-scaffold na na JAQMCO010000057.1 <> na Primary Assembly 53583 na scaffold_163_ctg1 unplaced-scaffold na na JAQMCO010000058.1 <> na Primary Assembly 49676 na scaffold_164_ctg1 unplaced-scaffold na na JAQMCO010000059.1 <> na Primary Assembly 48767 na scaffold_165_ctg1 unplaced-scaffold na na JAQMCO010000060.1 <> na Primary Assembly 48105 na scaffold_166_ctg1 unplaced-scaffold na na JAQMCO010000061.1 <> na Primary Assembly 47772 na scaffold_167_ctg1 unplaced-scaffold na na JAQMCO010000062.1 <> na Primary Assembly 45560 na scaffold_168_ctg1 unplaced-scaffold na na JAQMCO010000063.1 <> na Primary Assembly 45291 na scaffold_169_ctg1 unplaced-scaffold na na JAQMCO010000064.1 <> na Primary Assembly 44392 na scaffold_170_ctg1 unplaced-scaffold na na JAQMCO010000065.1 <> na Primary Assembly 43719 na scaffold_171_ctg1 unplaced-scaffold na na JAQMCO010000066.1 <> na Primary Assembly 43268 na scaffold_172_ctg1 unplaced-scaffold na na JAQMCO010000067.1 <> na Primary Assembly 42863 na scaffold_173_ctg1 unplaced-scaffold na na JAQMCO010000068.1 <> na Primary Assembly 41622 na scaffold_174_ctg1 unplaced-scaffold na na JAQMCO010000069.1 <> na Primary Assembly 41032 na scaffold_175_ctg1 unplaced-scaffold na na JAQMCO010000070.1 <> na Primary Assembly 39692 na scaffold_176_ctg1 unplaced-scaffold na na JAQMCO010000071.1 <> na Primary Assembly 39538 na scaffold_177_ctg1 unplaced-scaffold na na JAQMCO010000072.1 <> na Primary Assembly 39333 na scaffold_178_ctg1 unplaced-scaffold na na JAQMCO010000073.1 <> na Primary Assembly 39287 na scaffold_179_ctg1 unplaced-scaffold na na JAQMCO010000074.1 <> na Primary Assembly 38188 na scaffold_180_ctg1 unplaced-scaffold na na JAQMCO010000075.1 <> na Primary Assembly 37952 na scaffold_181_ctg1 unplaced-scaffold na na JAQMCO010000076.1 <> na Primary Assembly 37851 na scaffold_182_ctg1 unplaced-scaffold na na JAQMCO010000077.1 <> na Primary Assembly 37920 na scaffold_183_ctg1 unplaced-scaffold na na JAQMCO010000078.1 <> na Primary Assembly 36421 na scaffold_184_ctg1 unplaced-scaffold na na JAQMCO010000079.1 <> na Primary Assembly 36179 na scaffold_185_ctg1 unplaced-scaffold na na JAQMCO010000080.1 <> na Primary Assembly 35551 na scaffold_186_ctg1 unplaced-scaffold na na JAQMCO010000081.1 <> na Primary Assembly 34966 na scaffold_187_ctg1 unplaced-scaffold na na JAQMCO010000082.1 <> na Primary Assembly 34485 na scaffold_188_ctg1 unplaced-scaffold na na JAQMCO010000083.1 <> na Primary Assembly 34419 na scaffold_189_ctg1 unplaced-scaffold na na JAQMCO010000084.1 <> na Primary Assembly 33889 na scaffold_190_ctg1 unplaced-scaffold na na JAQMCO010000085.1 <> na Primary Assembly 33789 na scaffold_191_ctg1 unplaced-scaffold na na JAQMCO010000086.1 <> na Primary Assembly 33000 na scaffold_192_ctg1 unplaced-scaffold na na JAQMCO010000087.1 <> na Primary Assembly 32648 na scaffold_193_ctg1 unplaced-scaffold na na JAQMCO010000088.1 <> na Primary Assembly 32379 na scaffold_194_ctg1 unplaced-scaffold na na JAQMCO010000089.1 <> na Primary Assembly 32097 na scaffold_195_ctg1 unplaced-scaffold na na JAQMCO010000090.1 <> na Primary Assembly 31845 na scaffold_196_ctg1 unplaced-scaffold na na JAQMCO010000091.1 <> na Primary Assembly 31596 na scaffold_197_ctg1 unplaced-scaffold na na JAQMCO010000092.1 <> na Primary Assembly 31327 na scaffold_198_ctg1 unplaced-scaffold na na JAQMCO010000093.1 <> na Primary Assembly 31078 na scaffold_199_ctg1 unplaced-scaffold na na JAQMCO010000094.1 <> na Primary Assembly 30982 na scaffold_200_ctg1 unplaced-scaffold na na JAQMCO010000095.1 <> na Primary Assembly 30875 na scaffold_201_ctg1 unplaced-scaffold na na JAQMCO010000096.1 <> na Primary Assembly 30812 na scaffold_202_ctg1 unplaced-scaffold na na JAQMCO010000097.1 <> na Primary Assembly 30581 na scaffold_203_ctg1 unplaced-scaffold na na JAQMCO010000098.1 <> na Primary Assembly 30228 na scaffold_204_ctg1 unplaced-scaffold na na JAQMCO010000099.1 <> na Primary Assembly 29723 na scaffold_205_ctg1 unplaced-scaffold na na JAQMCO010000100.1 <> na Primary Assembly 30042 na scaffold_206_ctg1 unplaced-scaffold na na JAQMCO010000101.1 <> na Primary Assembly 29884 na scaffold_207_ctg1 unplaced-scaffold na na JAQMCO010000102.1 <> na Primary Assembly 29584 na scaffold_208_ctg1 unplaced-scaffold na na JAQMCO010000103.1 <> na Primary Assembly 29501 na scaffold_209_ctg1 unplaced-scaffold na na JAQMCO010000104.1 <> na Primary Assembly 27854 na scaffold_210_ctg1 unplaced-scaffold na na JAQMCO010000105.1 <> na Primary Assembly 26493 na scaffold_211_ctg1 unplaced-scaffold na na JAQMCO010000106.1 <> na Primary Assembly 26399 na scaffold_212_ctg1 unplaced-scaffold na na JAQMCO010000107.1 <> na Primary Assembly 24470 na scaffold_213_ctg1 unplaced-scaffold na na JAQMCO010000108.1 <> na Primary Assembly 23929 na scaffold_214_ctg1 unplaced-scaffold na na JAQMCO010000109.1 <> na Primary Assembly 23647 na scaffold_215_ctg1 unplaced-scaffold na na JAQMCO010000110.1 <> na Primary Assembly 23050 na scaffold_216_ctg1 unplaced-scaffold na na JAQMCO010000111.1 <> na Primary Assembly 23066 na scaffold_217_ctg1 unplaced-scaffold na na JAQMCO010000112.1 <> na Primary Assembly 22853 na scaffold_218_ctg1 unplaced-scaffold na na JAQMCO010000113.1 <> na Primary Assembly 22098 na scaffold_219_ctg1 unplaced-scaffold na na JAQMCO010000114.1 <> na Primary Assembly 21103 na scaffold_220_ctg1 unplaced-scaffold na na JAQMCO010000115.1 <> na Primary Assembly 20724 na scaffold_221_ctg1 unplaced-scaffold na na JAQMCO010000116.1 <> na Primary Assembly 20070 na mEreDor1 assembled-molecule MT Mitochondrion CM051845.1 <> na non-nuclear 16828 na