# Assembly name:  rEmyOrb1.hap1
# Organism name:  Emys orbicularis (European pond turtle)
# Isolate:  rEmyOrb1
# Sex:  male
# Taxid:          82168
# BioSample:      SAMN31805221
# BioProject:     PRJNA919152
# Submitter:      Vertebrate Genomes Project
# Date:           2023-01-30
# Assembly type:  haploid
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    JAQMCU01
# Assembly method: Hifiasm + Hi-C phasing v. 0.16.1 + galaxy2; Bionano Solve v. 3.7.0 + galaxy0; salsa v. 2.3 + galaxy2
# Expected final version: no
# Genome coverage: 30.12x
# Sequencing technology: PacBio Sequel II HiFi; Bionano DLS; Arima Hi-C v2
# RefSeq category: Representative Genome
# GenBank assembly accession: GCA_028017835.1
#
## Assembly-Units:
## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
## GCA_028018095.1		Primary Assembly
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
SUPER_1	assembled-molecule	1	Chromosome	CM051430.1	<>	na	Primary Assembly	373885020	na
SUPER_2	assembled-molecule	2	Chromosome	CM051431.1	<>	na	Primary Assembly	300499247	na
SUPER_3	assembled-molecule	3	Chromosome	CM051432.1	<>	na	Primary Assembly	217678973	na
SUPER_4	assembled-molecule	4	Chromosome	CM051433.1	<>	na	Primary Assembly	158421364	na
SUPER_5	assembled-molecule	5	Chromosome	CM051434.1	<>	na	Primary Assembly	146456333	na
SUPER_6	assembled-molecule	6	Chromosome	CM051435.1	<>	na	Primary Assembly	137743343	na
SUPER_7	assembled-molecule	7	Chromosome	CM051436.1	<>	na	Primary Assembly	131897773	na
SUPER_8	assembled-molecule	8	Chromosome	CM051437.1	<>	na	Primary Assembly	114201796	na
SUPER_9	assembled-molecule	9	Chromosome	CM051438.1	<>	na	Primary Assembly	107854333	na
SUPER_10	assembled-molecule	10	Chromosome	CM051439.1	<>	na	Primary Assembly	91255289	na
SUPER_11	assembled-molecule	11	Chromosome	CM051440.1	<>	na	Primary Assembly	81296055	na
SUPER_12	assembled-molecule	12	Chromosome	CM051441.1	<>	na	Primary Assembly	56086520	na
SUPER_13	assembled-molecule	13	Chromosome	CM051442.1	<>	na	Primary Assembly	51050369	na
SUPER_14	assembled-molecule	14	Chromosome	CM051443.1	<>	na	Primary Assembly	46357444	na
SUPER_15	assembled-molecule	15	Chromosome	CM051444.1	<>	na	Primary Assembly	34905662	na
SUPER_16	assembled-molecule	16	Chromosome	CM051445.1	<>	na	Primary Assembly	34215272	na
SUPER_17	assembled-molecule	17	Chromosome	CM051446.1	<>	na	Primary Assembly	29610363	na
SUPER_18	assembled-molecule	18	Chromosome	CM051447.1	<>	na	Primary Assembly	27602313	na
SUPER_19	assembled-molecule	19	Chromosome	CM051448.1	<>	na	Primary Assembly	25151755	na
SUPER_20	assembled-molecule	20	Chromosome	CM051449.1	<>	na	Primary Assembly	24827515	na
SUPER_21	assembled-molecule	21	Chromosome	CM051450.1	<>	na	Primary Assembly	21976372	na
SUPER_22	assembled-molecule	22	Chromosome	CM051451.1	<>	na	Primary Assembly	24115629	na
SUPER_23	assembled-molecule	23	Chromosome	CM051452.1	<>	na	Primary Assembly	22044855	na
SUPER_24	assembled-molecule	24	Chromosome	CM051453.1	<>	na	Primary Assembly	18487242	na
SUPER_25	assembled-molecule	25	Chromosome	CM051454.1	<>	na	Primary Assembly	18164433	na
SUPER_1_unloc_1	unlocalized-scaffold	1	Chromosome	JAQMCU010000002.1	<>	na	Primary Assembly	167264	na
SUPER_1_unloc_2	unlocalized-scaffold	1	Chromosome	JAQMCU010000003.1	<>	na	Primary Assembly	85092	na
SUPER_2_unloc_1	unlocalized-scaffold	2	Chromosome	JAQMCU010000005.1	<>	na	Primary Assembly	217521	na
SUPER_2_unloc_2	unlocalized-scaffold	2	Chromosome	JAQMCU010000006.1	<>	na	Primary Assembly	69365	na
SUPER_2_unloc_3	unlocalized-scaffold	2	Chromosome	JAQMCU010000007.1	<>	na	Primary Assembly	69029	na
SUPER_2_unloc_4	unlocalized-scaffold	2	Chromosome	JAQMCU010000008.1	<>	na	Primary Assembly	67365	na
SUPER_2_unloc_5	unlocalized-scaffold	2	Chromosome	JAQMCU010000009.1	<>	na	Primary Assembly	43810	na
SUPER_3_unloc_1	unlocalized-scaffold	3	Chromosome	JAQMCU010000011.1	<>	na	Primary Assembly	384042	na
SUPER_3_unloc_2	unlocalized-scaffold	3	Chromosome	JAQMCU010000012.1	<>	na	Primary Assembly	43777	na
SUPER_4_unloc_1	unlocalized-scaffold	4	Chromosome	JAQMCU010000014.1	<>	na	Primary Assembly	327096	na
SUPER_4_unloc_2	unlocalized-scaffold	4	Chromosome	JAQMCU010000015.1	<>	na	Primary Assembly	155244	na
SUPER_5_unloc_1	unlocalized-scaffold	5	Chromosome	JAQMCU010000017.1	<>	na	Primary Assembly	148047	na
SUPER_5_unloc_2	unlocalized-scaffold	5	Chromosome	JAQMCU010000018.1	<>	na	Primary Assembly	35895	na
SUPER_11_unloc_1	unlocalized-scaffold	11	Chromosome	JAQMCU010000025.1	<>	na	Primary Assembly	64303	na
SUPER_12_unloc_1	unlocalized-scaffold	12	Chromosome	JAQMCU010000027.1	<>	na	Primary Assembly	453301	na
SUPER_12_unloc_2	unlocalized-scaffold	12	Chromosome	JAQMCU010000028.1	<>	na	Primary Assembly	224497	na
SUPER_13_unloc_1	unlocalized-scaffold	13	Chromosome	JAQMCU010000030.1	<>	na	Primary Assembly	110748	na
SUPER_14_unloc_1	unlocalized-scaffold	14	Chromosome	JAQMCU010000032.1	<>	na	Primary Assembly	963946	na
SUPER_15_unloc_1	unlocalized-scaffold	15	Chromosome	JAQMCU010000034.1	<>	na	Primary Assembly	120470	na
SUPER_15_unloc_2	unlocalized-scaffold	15	Chromosome	JAQMCU010000035.1	<>	na	Primary Assembly	104523	na
SUPER_15_unloc_3	unlocalized-scaffold	15	Chromosome	JAQMCU010000036.1	<>	na	Primary Assembly	94805	na
SUPER_15_unloc_4	unlocalized-scaffold	15	Chromosome	JAQMCU010000037.1	<>	na	Primary Assembly	80003	na
SUPER_15_unloc_5	unlocalized-scaffold	15	Chromosome	JAQMCU010000038.1	<>	na	Primary Assembly	47107	na
SUPER_15_unloc_6	unlocalized-scaffold	15	Chromosome	JAQMCU010000039.1	<>	na	Primary Assembly	30646	na
SUPER_15_unloc_7	unlocalized-scaffold	15	Chromosome	JAQMCU010000040.1	<>	na	Primary Assembly	24965	na
SUPER_15_unloc_8	unlocalized-scaffold	15	Chromosome	JAQMCU010000041.1	<>	na	Primary Assembly	17980	na
SUPER_19_unloc_1	unlocalized-scaffold	19	Chromosome	JAQMCU010000046.1	<>	na	Primary Assembly	363986	na
SUPER_19_unloc_2	unlocalized-scaffold	19	Chromosome	JAQMCU010000047.1	<>	na	Primary Assembly	146614	na
SUPER_19_unloc_3	unlocalized-scaffold	19	Chromosome	JAQMCU010000048.1	<>	na	Primary Assembly	69980	na
SUPER_21_unloc_1	unlocalized-scaffold	21	Chromosome	JAQMCU010000051.1	<>	na	Primary Assembly	769769	na
SUPER_21_unloc_2	unlocalized-scaffold	21	Chromosome	JAQMCU010000052.1	<>	na	Primary Assembly	525998	na
SUPER_21_unloc_3	unlocalized-scaffold	21	Chromosome	JAQMCU010000053.1	<>	na	Primary Assembly	163118	na
SUPER_21_unloc_4	unlocalized-scaffold	21	Chromosome	JAQMCU010000054.1	<>	na	Primary Assembly	141505	na
SUPER_21_unloc_5	unlocalized-scaffold	21	Chromosome	JAQMCU010000055.1	<>	na	Primary Assembly	122377	na
SUPER_21_unloc_6	unlocalized-scaffold	21	Chromosome	JAQMCU010000056.1	<>	na	Primary Assembly	120816	na
SUPER_21_unloc_7	unlocalized-scaffold	21	Chromosome	JAQMCU010000057.1	<>	na	Primary Assembly	104775	na
SUPER_21_unloc_8	unlocalized-scaffold	21	Chromosome	JAQMCU010000058.1	<>	na	Primary Assembly	55204	na
SUPER_21_unloc_9	unlocalized-scaffold	21	Chromosome	JAQMCU010000059.1	<>	na	Primary Assembly	53255	na
SUPER_21_unloc_10	unlocalized-scaffold	21	Chromosome	JAQMCU010000060.1	<>	na	Primary Assembly	51076	na
SUPER_21_unloc_11	unlocalized-scaffold	21	Chromosome	JAQMCU010000061.1	<>	na	Primary Assembly	49998	na
SUPER_21_unloc_12	unlocalized-scaffold	21	Chromosome	JAQMCU010000062.1	<>	na	Primary Assembly	48242	na
SUPER_21_unloc_13	unlocalized-scaffold	21	Chromosome	JAQMCU010000063.1	<>	na	Primary Assembly	43569	na
SUPER_23_unloc_1	unlocalized-scaffold	23	Chromosome	JAQMCU010000066.1	<>	na	Primary Assembly	347010	na
SUPER_23_unloc_2	unlocalized-scaffold	23	Chromosome	JAQMCU010000067.1	<>	na	Primary Assembly	225073	na
SUPER_23_unloc_3	unlocalized-scaffold	23	Chromosome	JAQMCU010000068.1	<>	na	Primary Assembly	35151	na
scaffold_100	unplaced-scaffold	na	na	JAQMCU010000087.1	<>	na	Primary Assembly	67353	na
scaffold_102	unplaced-scaffold	na	na	JAQMCU010000074.1	<>	na	Primary Assembly	66576	na
scaffold_103	unplaced-scaffold	na	na	JAQMCU010000106.1	<>	na	Primary Assembly	65855	na
scaffold_106	unplaced-scaffold	na	na	JAQMCU010000076.1	<>	na	Primary Assembly	56799	na
scaffold_107	unplaced-scaffold	na	na	JAQMCU010000077.1	<>	na	Primary Assembly	56492	na
scaffold_115	unplaced-scaffold	na	na	JAQMCU010000090.1	<>	na	Primary Assembly	46563	na
scaffold_117	unplaced-scaffold	na	na	JAQMCU010000072.1	<>	na	Primary Assembly	45022	na
scaffold_122	unplaced-scaffold	na	na	JAQMCU010000102.1	<>	na	Primary Assembly	43025	na
scaffold_124	unplaced-scaffold	na	na	JAQMCU010000086.1	<>	na	Primary Assembly	42327	na
scaffold_125	unplaced-scaffold	na	na	JAQMCU010000084.1	<>	na	Primary Assembly	42009	na
scaffold_128	unplaced-scaffold	na	na	JAQMCU010000080.1	<>	na	Primary Assembly	41273	na
scaffold_130	unplaced-scaffold	na	na	JAQMCU010000096.1	<>	na	Primary Assembly	39310	na
scaffold_131	unplaced-scaffold	na	na	JAQMCU010000071.1	<>	na	Primary Assembly	39237	na
scaffold_139	unplaced-scaffold	na	na	JAQMCU010000085.1	<>	na	Primary Assembly	33830	na
scaffold_141	unplaced-scaffold	na	na	JAQMCU010000093.1	<>	na	Primary Assembly	32274	na
scaffold_143	unplaced-scaffold	na	na	JAQMCU010000100.1	<>	na	Primary Assembly	31977	na
scaffold_144	unplaced-scaffold	na	na	JAQMCU010000091.1	<>	na	Primary Assembly	31250	na
scaffold_146	unplaced-scaffold	na	na	JAQMCU010000082.1	<>	na	Primary Assembly	30119	na
scaffold_149	unplaced-scaffold	na	na	JAQMCU010000104.1	<>	na	Primary Assembly	27180	na
scaffold_150	unplaced-scaffold	na	na	JAQMCU010000094.1	<>	na	Primary Assembly	26998	na
scaffold_151	unplaced-scaffold	na	na	JAQMCU010000088.1	<>	na	Primary Assembly	25981	na
scaffold_156	unplaced-scaffold	na	na	JAQMCU010000105.1	<>	na	Primary Assembly	23739	na
scaffold_159	unplaced-scaffold	na	na	JAQMCU010000079.1	<>	na	Primary Assembly	16962	na
scaffold_40	unplaced-scaffold	na	na	JAQMCU010000098.1	<>	na	Primary Assembly	1888659	na
scaffold_44	unplaced-scaffold	na	na	JAQMCU010000097.1	<>	na	Primary Assembly	799863	na
scaffold_46	unplaced-scaffold	na	na	JAQMCU010000092.1	<>	na	Primary Assembly	755340	na
scaffold_49	unplaced-scaffold	na	na	JAQMCU010000078.1	<>	na	Primary Assembly	614449	na
scaffold_55	unplaced-scaffold	na	na	JAQMCU010000103.1	<>	na	Primary Assembly	447853	na
scaffold_73	unplaced-scaffold	na	na	JAQMCU010000073.1	<>	na	Primary Assembly	181975	na
scaffold_78	unplaced-scaffold	na	na	JAQMCU010000099.1	<>	na	Primary Assembly	154581	na
scaffold_82	unplaced-scaffold	na	na	JAQMCU010000083.1	<>	na	Primary Assembly	124996	na
scaffold_87	unplaced-scaffold	na	na	JAQMCU010000089.1	<>	na	Primary Assembly	109753	na
scaffold_90	unplaced-scaffold	na	na	JAQMCU010000081.1	<>	na	Primary Assembly	102344	na
scaffold_92	unplaced-scaffold	na	na	JAQMCU010000095.1	<>	na	Primary Assembly	90008	na
scaffold_94	unplaced-scaffold	na	na	JAQMCU010000075.1	<>	na	Primary Assembly	83401	na
scaffold_95	unplaced-scaffold	na	na	JAQMCU010000101.1	<>	na	Primary Assembly	81635	na