# Assembly name: rMalTer1.hap2 # Organism name: Malaclemys terrapin pileata (diamondback terrapin) # Isolate: rMalTer1 # Sex: male # Taxid: 2991368 # BioSample: SAMN31394215 # BioProject: PRJNA895897 # Submitter: Vertebrate Genomes Project # Date: 2023-01-18 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAQIHJ01 # Assembly method: Hifiasm + Hi-C phasing v. 0.16.1 + galaxy2; Bionano Solve v. 3.7; salsa v. 2.3 + galaxy2; gEVAL manual curtion v. 2022-07-08 # Expected final version: no # Genome coverage: 30.26x # Sequencing technology: PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2 # GenBank assembly accession: GCA_027887205.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_027887215.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM051133.1 <> na Primary Assembly 356042910 na SUPER_2 assembled-molecule 2 Chromosome CM051134.1 <> na Primary Assembly 287229842 na SUPER_3 assembled-molecule 3 Chromosome CM051135.1 <> na Primary Assembly 209325478 na SUPER_4 assembled-molecule 4 Chromosome CM051136.1 <> na Primary Assembly 157202818 na SUPER_5 assembled-molecule 5 Chromosome CM051137.1 <> na Primary Assembly 143972775 na SUPER_6 assembled-molecule 6 Chromosome CM051138.1 <> na Primary Assembly 134405852 na SUPER_7 assembled-molecule 7 Chromosome CM051139.1 <> na Primary Assembly 128411964 na SUPER_8 assembled-molecule 8 Chromosome CM051140.1 <> na Primary Assembly 110597982 na SUPER_9 assembled-molecule 9 Chromosome CM051141.1 <> na Primary Assembly 105657989 na SUPER_10 assembled-molecule 10 Chromosome CM051142.1 <> na Primary Assembly 87714562 na SUPER_11 assembled-molecule 11 Chromosome CM051143.1 <> na Primary Assembly 80016585 na SUPER_12 assembled-molecule 12 Chromosome CM051144.1 <> na Primary Assembly 49811393 na SUPER_13 assembled-molecule 13 Chromosome CM051145.1 <> na Primary Assembly 48332513 na SUPER_14 assembled-molecule 14 Chromosome CM051146.1 <> na Primary Assembly 44561670 na SUPER_15 assembled-molecule 15 Chromosome CM051147.1 <> na Primary Assembly 34237447 na SUPER_16 assembled-molecule 16 Chromosome CM051148.1 <> na Primary Assembly 33294166 na SUPER_17 assembled-molecule 17 Chromosome CM051149.1 <> na Primary Assembly 27329731 na SUPER_18 assembled-molecule 18 Chromosome CM051150.1 <> na Primary Assembly 25997231 na SUPER_19 assembled-molecule 19 Chromosome CM051151.1 <> na Primary Assembly 23510539 na SUPER_20 assembled-molecule 20 Chromosome CM051152.1 <> na Primary Assembly 21990629 na SUPER_21 assembled-molecule 21 Chromosome CM051153.1 <> na Primary Assembly 22669309 na SUPER_22 assembled-molecule 22 Chromosome CM051154.1 <> na Primary Assembly 20675496 na SUPER_23 assembled-molecule 23 Chromosome CM051155.1 <> na Primary Assembly 20043902 na SUPER_24 assembled-molecule 24 Chromosome CM051156.1 <> na Primary Assembly 18064150 na SUPER_25 assembled-molecule 25 Chromosome CM051157.1 <> na Primary Assembly 17423841 na SUPER_5_unloc_1 unlocalized-scaffold 5 Chromosome JAQIHJ010000006.1 <> na Primary Assembly 234751 na SUPER_20_unloc_1 unlocalized-scaffold 20 Chromosome JAQIHJ010000022.1 <> na Primary Assembly 542191 na SUPER_20_unloc_2 unlocalized-scaffold 20 Chromosome JAQIHJ010000023.1 <> na Primary Assembly 439977 na SUPER_20_unloc_3 unlocalized-scaffold 20 Chromosome JAQIHJ010000024.1 <> na Primary Assembly 260272 na SUPER_20_unloc_4 unlocalized-scaffold 20 Chromosome JAQIHJ010000025.1 <> na Primary Assembly 65682 na SUPER_20_unloc_5 unlocalized-scaffold 20 Chromosome JAQIHJ010000026.1 <> na Primary Assembly 48723 na H_1 unplaced-scaffold na na JAQIHJ010000059.1 <> na Primary Assembly 1056919 na scaffold_101 unplaced-scaffold na na JAQIHJ010000047.1 <> na Primary Assembly 41642 na scaffold_103 unplaced-scaffold na na JAQIHJ010000048.1 <> na Primary Assembly 37980 na scaffold_105 unplaced-scaffold na na JAQIHJ010000049.1 <> na Primary Assembly 35843 na scaffold_107 unplaced-scaffold na na JAQIHJ010000050.1 <> na Primary Assembly 33552 na scaffold_109 unplaced-scaffold na na JAQIHJ010000051.1 <> na Primary Assembly 31192 na scaffold_111 unplaced-scaffold na na JAQIHJ010000052.1 <> na Primary Assembly 29955 na scaffold_112 unplaced-scaffold na na JAQIHJ010000042.1 <> na Primary Assembly 27032 na scaffold_113 unplaced-scaffold na na JAQIHJ010000053.1 <> na Primary Assembly 23245 na scaffold_114 unplaced-scaffold na na JAQIHJ010000054.1 <> na Primary Assembly 23220 na scaffold_115 unplaced-scaffold na na JAQIHJ010000043.1 <> na Primary Assembly 14894 na scaffold_64 unplaced-scaffold na na JAQIHJ010000044.1 <> na Primary Assembly 213840 na scaffold_69 unplaced-scaffold na na JAQIHJ010000033.1 <> na Primary Assembly 131664 na scaffold_71 unplaced-scaffold na na JAQIHJ010000045.1 <> na Primary Assembly 113940 na scaffold_72 unplaced-scaffold na na JAQIHJ010000034.1 <> na Primary Assembly 95520 na scaffold_73 unplaced-scaffold na na JAQIHJ010000035.1 <> na Primary Assembly 91254 na scaffold_74 unplaced-scaffold na na JAQIHJ010000036.1 <> na Primary Assembly 80506 na scaffold_78 unplaced-scaffold na na JAQIHJ010000037.1 <> na Primary Assembly 73348 na scaffold_79 unplaced-scaffold na na JAQIHJ010000038.1 <> na Primary Assembly 69604 na scaffold_80 unplaced-scaffold na na JAQIHJ010000039.1 <> na Primary Assembly 69084 na scaffold_81 unplaced-scaffold na na JAQIHJ010000040.1 <> na Primary Assembly 66521 na scaffold_83 unplaced-scaffold na na JAQIHJ010000041.1 <> na Primary Assembly 64645 na scaffold_87 unplaced-scaffold na na JAQIHJ010000055.1 <> na Primary Assembly 54017 na scaffold_88 unplaced-scaffold na na JAQIHJ010000032.1 <> na Primary Assembly 52779 na scaffold_89 unplaced-scaffold na na JAQIHJ010000046.1 <> na Primary Assembly 49548 na scaffold_91 unplaced-scaffold na na JAQIHJ010000056.1 <> na Primary Assembly 48862 na scaffold_94 unplaced-scaffold na na JAQIHJ010000057.1 <> na Primary Assembly 47582 na scaffold_98 unplaced-scaffold na na JAQIHJ010000058.1 <> na Primary Assembly 46481 na