# Assembly name: mThoBot1.0.p # Organism name: Thomomys bottae (Botta's pocket gopher) # Infraspecific name: ecotype=bottae # Isolate: MVZ:Mamm:240275 # Sex: male # Taxid: 10013 # BioSample: SAMN29044214 # BioProject: PRJNA851166 # Submitter: UCLA # Date: 2022-09-01 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JANJXV01 # Assembly method: HiFiasm v. 0.16.1-r375; SALSA v. 2 # Expected final version: no # Genome coverage: 28x # Sequencing technology: PacBio Sequel; Illumina NovaSeq; Dovetails OmniC # RefSeq category: Representative Genome # GenBank assembly accession: GCA_024803745.1 # Linked assembly: GCA_024803775.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_024803755.1 Primary Assembly ## GCA_024803765.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SCAF_1 unplaced-scaffold na na JANJXV010000001.1 <> na Primary Assembly 81460496 na SCAF_2 unplaced-scaffold na na JANJXV010000002.1 <> na Primary Assembly 79296966 na SCAF_3 unplaced-scaffold na na JANJXV010000003.1 <> na Primary Assembly 68381341 na SCAF_4 unplaced-scaffold na na JANJXV010000004.1 <> na Primary Assembly 67923271 na SCAF_5 unplaced-scaffold na na JANJXV010000005.1 <> na Primary Assembly 67749906 na SCAF_6 unplaced-scaffold na na JANJXV010000006.1 <> na Primary Assembly 67731767 na SCAF_7 unplaced-scaffold na na JANJXV010000007.1 <> na Primary Assembly 65830449 na SCAF_8 unplaced-scaffold na na JANJXV010000008.1 <> na Primary Assembly 65586224 na SCAF_9 unplaced-scaffold na na JANJXV010000009.1 <> na Primary Assembly 63295285 na SCAF_10 unplaced-scaffold na na JANJXV010000010.1 <> na Primary Assembly 61362610 na SCAF_11 unplaced-scaffold na na JANJXV010000011.1 <> na Primary Assembly 60027042 na SCAF_12 unplaced-scaffold na na JANJXV010000012.1 <> na Primary Assembly 59183610 na SCAF_13 unplaced-scaffold na na JANJXV010000013.1 <> na Primary Assembly 58614941 na SCAF_14 unplaced-scaffold na na JANJXV010000014.1 <> na Primary Assembly 56206579 na SCAF_15 unplaced-scaffold na na JANJXV010000015.1 <> na Primary Assembly 53556495 na SCAF_16 unplaced-scaffold na na JANJXV010000016.1 <> na Primary Assembly 46189931 na SCAF_17 unplaced-scaffold na na JANJXV010000017.1 <> na Primary Assembly 45642393 na SCAF_18 unplaced-scaffold na na JANJXV010000018.1 <> na Primary Assembly 43106278 na SCAF_19 unplaced-scaffold na na JANJXV010000019.1 <> na Primary Assembly 37225226 na SCAF_20 unplaced-scaffold na na JANJXV010000020.1 <> na Primary Assembly 36211123 na SCAF_21 unplaced-scaffold na na JANJXV010000021.1 <> na Primary Assembly 33268924 na SCAF_22 unplaced-scaffold na na JANJXV010000022.1 <> na Primary Assembly 32949384 na SCAF_23 unplaced-scaffold na na JANJXV010000023.1 <> na Primary Assembly 31131746 na SCAF_24 unplaced-scaffold na na JANJXV010000024.1 <> na Primary Assembly 28462873 na SCAF_25 unplaced-scaffold na na JANJXV010000025.1 <> na Primary Assembly 27927140 na SCAF_26 unplaced-scaffold na na JANJXV010000026.1 <> na Primary Assembly 27418307 na SCAF_27 unplaced-scaffold na na JANJXV010000027.1 <> na Primary Assembly 27079335 na SCAF_28 unplaced-scaffold na na JANJXV010000028.1 <> na Primary Assembly 26618111 na SCAF_29 unplaced-scaffold na na JANJXV010000029.1 <> na Primary Assembly 23603529 na SCAF_30 unplaced-scaffold na na JANJXV010000030.1 <> na Primary Assembly 22313995 na SCAF_31 unplaced-scaffold na na JANJXV010000031.1 <> na Primary Assembly 22163926 na SCAF_32 unplaced-scaffold na na JANJXV010000032.1 <> na Primary Assembly 19415193 na SCAF_33 unplaced-scaffold na na JANJXV010000033.1 <> na Primary Assembly 18108178 na SCAF_34 unplaced-scaffold na na JANJXV010000034.1 <> na Primary Assembly 17884705 na SCAF_35 unplaced-scaffold na na JANJXV010000035.1 <> na Primary Assembly 16520453 na SCAF_36 unplaced-scaffold na na JANJXV010000036.1 <> na Primary Assembly 16494637 na SCAF_37 unplaced-scaffold na na JANJXV010000037.1 <> na Primary Assembly 13142597 na SCAF_38 unplaced-scaffold na na JANJXV010000038.1 <> na Primary Assembly 12035746 na SCAF_39 unplaced-scaffold na na JANJXV010000039.1 <> na Primary Assembly 11519000 na SCAF_40 unplaced-scaffold na na JANJXV010000040.1 <> na Primary Assembly 11141280 na SCAF_41 unplaced-scaffold na na JANJXV010000041.1 <> na Primary Assembly 10516667 na SCAF_42 unplaced-scaffold na na JANJXV010000042.1 <> na Primary Assembly 9204342 na SCAF_43 unplaced-scaffold na na JANJXV010000043.1 <> na Primary Assembly 9191306 na SCAF_44 unplaced-scaffold na na JANJXV010000044.1 <> na Primary Assembly 8851247 na SCAF_45 unplaced-scaffold na na JANJXV010000045.1 <> na Primary Assembly 8008543 na SCAF_46 unplaced-scaffold na na JANJXV010000046.1 <> na Primary Assembly 7979748 na SCAF_47 unplaced-scaffold na na JANJXV010000047.1 <> na Primary Assembly 7117981 na SCAF_48 unplaced-scaffold na na JANJXV010000048.1 <> na Primary Assembly 7078810 na SCAF_49 unplaced-scaffold na na JANJXV010000049.1 <> na Primary Assembly 6819888 na SCAF_50 unplaced-scaffold na na JANJXV010000050.1 <> na Primary Assembly 6522514 na SCAF_51 unplaced-scaffold na na JANJXV010000051.1 <> na Primary Assembly 5965085 na SCAF_52 unplaced-scaffold na na JANJXV010000052.1 <> na Primary Assembly 5761658 na SCAF_53 unplaced-scaffold na na JANJXV010000053.1 <> na Primary Assembly 5510915 na SCAF_54 unplaced-scaffold na na JANJXV010000054.1 <> na Primary Assembly 5477686 na SCAF_55 unplaced-scaffold na na JANJXV010000055.1 <> na Primary Assembly 5233057 na SCAF_56 unplaced-scaffold na na JANJXV010000056.1 <> na Primary Assembly 5145803 na SCAF_57 unplaced-scaffold na na JANJXV010000057.1 <> na Primary Assembly 5084127 na SCAF_58 unplaced-scaffold na na JANJXV010000058.1 <> na Primary Assembly 5020836 na SCAF_59 unplaced-scaffold na na JANJXV010000059.1 <> na Primary Assembly 4939189 na SCAF_60 unplaced-scaffold na na JANJXV010000060.1 <> na Primary Assembly 4806411 na SCAF_61 unplaced-scaffold na na JANJXV010000061.1 <> na Primary Assembly 4775840 na SCAF_62 unplaced-scaffold na na JANJXV010000062.1 <> na Primary Assembly 4671223 na SCAF_63 unplaced-scaffold na na JANJXV010000063.1 <> na Primary Assembly 4569362 na SCAF_64 unplaced-scaffold na na JANJXV010000064.1 <> na Primary Assembly 4515856 na SCAF_65 unplaced-scaffold na na JANJXV010000065.1 <> na Primary Assembly 4396701 na SCAF_66 unplaced-scaffold na na JANJXV010000066.1 <> na Primary Assembly 4316256 na SCAF_67 unplaced-scaffold na na JANJXV010000067.1 <> na Primary Assembly 4232579 na SCAF_68 unplaced-scaffold na na JANJXV010000068.1 <> na Primary Assembly 4232448 na SCAF_69 unplaced-scaffold na na JANJXV010000069.1 <> na Primary Assembly 4223855 na SCAF_70 unplaced-scaffold na na JANJXV010000070.1 <> na Primary Assembly 4182586 na SCAF_71 unplaced-scaffold na na JANJXV010000071.1 <> na Primary Assembly 4119088 na SCAF_72 unplaced-scaffold na na JANJXV010000072.1 <> na Primary Assembly 4113857 na SCAF_73 unplaced-scaffold na na JANJXV010000073.1 <> na Primary Assembly 4078971 na SCAF_74 unplaced-scaffold na na JANJXV010000074.1 <> na Primary Assembly 3941730 na SCAF_75 unplaced-scaffold na na JANJXV010000075.1 <> na Primary Assembly 3914274 na SCAF_76 unplaced-scaffold na na JANJXV010000076.1 <> na Primary Assembly 3908491 na SCAF_77 unplaced-scaffold na na JANJXV010000077.1 <> na Primary Assembly 3880173 na SCAF_78 unplaced-scaffold na na JANJXV010000078.1 <> na Primary Assembly 3873974 na SCAF_79 unplaced-scaffold na na JANJXV010000079.1 <> na Primary Assembly 3848135 na SCAF_80 unplaced-scaffold na na JANJXV010000080.1 <> na Primary Assembly 3837808 na SCAF_81 unplaced-scaffold na na JANJXV010000081.1 <> na Primary Assembly 3771747 na SCAF_82 unplaced-scaffold na na JANJXV010000082.1 <> na Primary Assembly 3766837 na SCAF_83 unplaced-scaffold na na JANJXV010000083.1 <> na Primary Assembly 3677895 na SCAF_84 unplaced-scaffold na na JANJXV010000084.1 <> na Primary Assembly 3672864 na SCAF_85 unplaced-scaffold na na JANJXV010000085.1 <> na Primary Assembly 3632964 na SCAF_86 unplaced-scaffold na na JANJXV010000086.1 <> na Primary Assembly 3600722 na SCAF_87 unplaced-scaffold na na JANJXV010000087.1 <> na Primary Assembly 3570438 na SCAF_88 unplaced-scaffold na na JANJXV010000088.1 <> na Primary Assembly 3558416 na SCAF_89 unplaced-scaffold na na JANJXV010000089.1 <> na Primary Assembly 3557237 na SCAF_90 unplaced-scaffold na na JANJXV010000090.1 <> na Primary Assembly 3502162 na SCAF_91 unplaced-scaffold na na JANJXV010000091.1 <> na Primary Assembly 3497714 na SCAF_92 unplaced-scaffold na na JANJXV010000092.1 <> na Primary Assembly 3494565 na SCAF_93 unplaced-scaffold na na JANJXV010000093.1 <> na Primary Assembly 3444867 na SCAF_94 unplaced-scaffold na na JANJXV010000094.1 <> na Primary Assembly 3411123 na SCAF_95 unplaced-scaffold na na JANJXV010000095.1 <> na Primary Assembly 3364424 na SCAF_96 unplaced-scaffold na na JANJXV010000096.1 <> na Primary Assembly 3354917 na SCAF_97 unplaced-scaffold na na JANJXV010000097.1 <> na Primary Assembly 3353216 na SCAF_98 unplaced-scaffold na na JANJXV010000098.1 <> na Primary Assembly 3328248 na SCAF_99 unplaced-scaffold na na JANJXV010000099.1 <> na Primary Assembly 3310475 na SCAF_100 unplaced-scaffold na na JANJXV010000100.1 <> na Primary Assembly 3247901 na SCAF_101 unplaced-scaffold na na JANJXV010000101.1 <> na Primary Assembly 3202458 na SCAF_102 unplaced-scaffold na na JANJXV010000102.1 <> na Primary Assembly 3201466 na SCAF_103 unplaced-scaffold na na JANJXV010000103.1 <> na Primary Assembly 3156008 na SCAF_104 unplaced-scaffold na na JANJXV010000104.1 <> na Primary Assembly 3155363 na SCAF_105 unplaced-scaffold na na JANJXV010000105.1 <> na Primary Assembly 3153155 na SCAF_106 unplaced-scaffold na na JANJXV010000106.1 <> na Primary Assembly 3146549 na SCAF_107 unplaced-scaffold na na JANJXV010000107.1 <> na Primary Assembly 3116576 na SCAF_108 unplaced-scaffold na na JANJXV010000108.1 <> na Primary Assembly 3110323 na SCAF_109 unplaced-scaffold na na JANJXV010000109.1 <> na Primary Assembly 3097894 na SCAF_110 unplaced-scaffold na na JANJXV010000110.1 <> na Primary Assembly 3066837 na SCAF_111 unplaced-scaffold na na JANJXV010000111.1 <> na Primary Assembly 3052598 na SCAF_112 unplaced-scaffold na na JANJXV010000112.1 <> na Primary Assembly 3046354 na SCAF_113 unplaced-scaffold na na JANJXV010000113.1 <> na Primary Assembly 2995843 na SCAF_114 unplaced-scaffold na na JANJXV010000114.1 <> na Primary Assembly 2945594 na SCAF_115 unplaced-scaffold na na 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unplaced-scaffold na na JANJXV010000127.1 <> na Primary Assembly 2695870 na SCAF_128 unplaced-scaffold na na JANJXV010000128.1 <> na Primary Assembly 2692346 na SCAF_129 unplaced-scaffold na na JANJXV010000129.1 <> na Primary Assembly 2691822 na SCAF_130 unplaced-scaffold na na JANJXV010000130.1 <> na Primary Assembly 2680417 na SCAF_131 unplaced-scaffold na na JANJXV010000131.1 <> na Primary Assembly 2679747 na SCAF_132 unplaced-scaffold na na JANJXV010000132.1 <> na Primary Assembly 2670969 na SCAF_133 unplaced-scaffold na na JANJXV010000133.1 <> na Primary Assembly 2649821 na SCAF_134 unplaced-scaffold na na JANJXV010000134.1 <> na Primary Assembly 2567867 na SCAF_135 unplaced-scaffold na na JANJXV010000135.1 <> na Primary Assembly 2561139 na SCAF_136 unplaced-scaffold na na JANJXV010000136.1 <> na Primary Assembly 2556136 na SCAF_137 unplaced-scaffold na na JANJXV010000137.1 <> na Primary Assembly 2507830 na SCAF_138 unplaced-scaffold na na JANJXV010000138.1 <> na Primary Assembly 2506621 na SCAF_139 unplaced-scaffold na na JANJXV010000139.1 <> na Primary Assembly 2503505 na SCAF_140 unplaced-scaffold na na JANJXV010000140.1 <> na Primary Assembly 2501316 na SCAF_141 unplaced-scaffold na na JANJXV010000141.1 <> na Primary Assembly 2454506 na SCAF_142 unplaced-scaffold na na JANJXV010000142.1 <> na Primary Assembly 2440194 na SCAF_143 unplaced-scaffold na na JANJXV010000143.1 <> na Primary Assembly 2435953 na SCAF_144 unplaced-scaffold na na JANJXV010000144.1 <> na Primary Assembly 2402818 na SCAF_145 unplaced-scaffold na na JANJXV010000145.1 <> na Primary Assembly 2372712 na SCAF_146 unplaced-scaffold na na JANJXV010000146.1 <> na Primary Assembly 2366067 na SCAF_147 unplaced-scaffold na na JANJXV010000147.1 <> na Primary Assembly 2365104 na SCAF_148 unplaced-scaffold na na JANJXV010000148.1 <> na Primary Assembly 2358108 na SCAF_149 unplaced-scaffold na na JANJXV010000149.1 <> na Primary Assembly 2347731 na SCAF_150 unplaced-scaffold na na JANJXV010000150.1 <> 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unplaced-scaffold na na JANJXV010000174.1 <> na Primary Assembly 1999226 na SCAF_175 unplaced-scaffold na na JANJXV010000175.1 <> na Primary Assembly 1983671 na SCAF_176 unplaced-scaffold na na JANJXV010000176.1 <> na Primary Assembly 1982435 na SCAF_177 unplaced-scaffold na na JANJXV010000177.1 <> na Primary Assembly 1977969 na SCAF_178 unplaced-scaffold na na JANJXV010000178.1 <> na Primary Assembly 1966180 na SCAF_179 unplaced-scaffold na na JANJXV010000179.1 <> na Primary Assembly 1962824 na SCAF_180 unplaced-scaffold na na JANJXV010000180.1 <> na Primary Assembly 1958362 na SCAF_181 unplaced-scaffold na na JANJXV010000181.1 <> na Primary Assembly 1951709 na SCAF_182 unplaced-scaffold na na JANJXV010000182.1 <> na Primary Assembly 1951365 na SCAF_183 unplaced-scaffold na na JANJXV010000183.1 <> na Primary Assembly 1940143 na SCAF_184 unplaced-scaffold na na JANJXV010000184.1 <> na Primary Assembly 1930311 na SCAF_185 unplaced-scaffold na na JANJXV010000185.1 <> na Primary Assembly 1924114 na SCAF_186 unplaced-scaffold na na JANJXV010000186.1 <> na Primary Assembly 1922261 na SCAF_187 unplaced-scaffold na na JANJXV010000187.1 <> na Primary Assembly 1921898 na SCAF_188 unplaced-scaffold na na JANJXV010000188.1 <> na Primary Assembly 1918356 na SCAF_189 unplaced-scaffold na na JANJXV010000189.1 <> na Primary Assembly 1913343 na SCAF_190 unplaced-scaffold na na JANJXV010000190.1 <> na Primary Assembly 1913112 na SCAF_191 unplaced-scaffold na na JANJXV010000191.1 <> na Primary Assembly 1909137 na SCAF_192 unplaced-scaffold na na JANJXV010000192.1 <> na Primary Assembly 1898483 na SCAF_193 unplaced-scaffold na na JANJXV010000193.1 <> na Primary Assembly 1894475 na SCAF_194 unplaced-scaffold na na JANJXV010000194.1 <> na Primary Assembly 1874668 na SCAF_195 unplaced-scaffold na na JANJXV010000195.1 <> na Primary Assembly 1853368 na SCAF_196 unplaced-scaffold na na JANJXV010000196.1 <> na Primary Assembly 1851674 na SCAF_197 unplaced-scaffold na na JANJXV010000197.1 <> 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