# Assembly name: bPhaSup1.pri # Organism name: Phaethornis superciliosus (long-tailed hermit) # Isolate: PSU5 # Sex: male # Taxid: 46513 # BioSample: SAMN23532249 # BioProject: PRJNA785144 # Submitter: The Max Planck Institute of Molecular Cell Biology and Genetics # Date: 2025-02-03 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAJQWJ02 # Assembly method: FALCON v. falcon-kit 1.8.1; Falcon Unzip v. 1.3.7; purge_dups v. 1.2.3; scaff10x v. 4.2; LongRanger v. 2.2.2; Bionano Solve v. 3.5.1; salsa2 v. 2.2; pbmm2 v. 1.3.0; freebayes v. 1.3.2; bwa v. 0.7.17-r1188; gcpp v. 2.0.2; bcftools v. 1.2-21-ga865a16 # Expected final version: no # Genome coverage: 85.0x # Sequencing technology: PacBio Sequel II CLR; 10X Genomics linked reads; Arima Genomics Hi-C (v2); Bionano Genomics DLS # RefSeq category: Reference Genome # GenBank assembly accession: GCA_023637945.2 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_023637955.2 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM104660.1 <> na Primary Assembly 196608326 na SUPER_2 assembled-molecule 2 Chromosome CM104661.1 <> na Primary Assembly 149693834 na SUPER_3 assembled-molecule 3 Chromosome CM104662.1 <> na Primary Assembly 114538491 na SUPER_4 assembled-molecule 4 Chromosome CM104663.1 <> na Primary Assembly 44855412 na SUPER_5 assembled-molecule 5 Chromosome CM104664.1 <> na Primary Assembly 43268209 na SUPER_6 assembled-molecule 6 Chromosome CM104665.1 <> na Primary Assembly 38810958 na SUPER_7 assembled-molecule 7 Chromosome CM104666.1 <> na Primary Assembly 35194150 na SUPER_8 assembled-molecule 8 Chromosome CM104667.1 <> na Primary Assembly 30563898 na SUPER_9 assembled-molecule 9 Chromosome CM104668.1 <> na Primary Assembly 25219980 na SUPER_10 assembled-molecule 10 Chromosome CM104669.1 <> na Primary Assembly 22990413 na SUPER_11 assembled-molecule 11 Chromosome CM104670.1 <> na Primary Assembly 21286868 na SUPER_12 assembled-molecule 12 Chromosome CM104671.1 <> na Primary Assembly 21155050 na SUPER_13 assembled-molecule 13 Chromosome CM104672.1 <> na Primary Assembly 20292787 na SUPER_14 assembled-molecule 14 Chromosome CM104673.1 <> na Primary Assembly 19651430 na SUPER_15 assembled-molecule 15 Chromosome CM104674.1 <> na Primary Assembly 17927688 na SUPER_16 assembled-molecule 16 Chromosome CM104675.1 <> na Primary Assembly 16180483 na SUPER_17 assembled-molecule 17 Chromosome CM104676.1 <> na Primary Assembly 16126040 na SUPER_18 assembled-molecule 18 Chromosome CM104677.1 <> na Primary Assembly 14857095 na SUPER_19 assembled-molecule 19 Chromosome CM104678.1 <> na Primary Assembly 13671754 na SUPER_20 assembled-molecule 20 Chromosome CM104679.1 <> na Primary Assembly 11902160 na SUPER_21 assembled-molecule 21 Chromosome CM104680.1 <> na Primary Assembly 10777928 na SUPER_22 assembled-molecule 22 Chromosome CM104681.1 <> na Primary Assembly 10713265 na SUPER_23 assembled-molecule 23 Chromosome CM104682.1 <> na Primary Assembly 7779952 na SUPER_24 assembled-molecule 24 Chromosome CM104683.1 <> na Primary Assembly 7236442 na SUPER_25 assembled-molecule 25 Chromosome CM104684.1 <> na Primary Assembly 7108234 na SUPER_26 assembled-molecule 26 Chromosome CM104685.1 <> na Primary Assembly 6082325 na SUPER_27 assembled-molecule 27 Chromosome CM104686.1 <> na Primary Assembly 5602443 na SUPER_28 assembled-molecule 28 Chromosome CM104687.1 <> na Primary Assembly 5177833 na SUPER_29 assembled-molecule 29 Chromosome CM104688.1 <> na Primary Assembly 4877725 na SUPER_30 assembled-molecule 30 Chromosome CM104689.1 <> na Primary Assembly 2742262 na SUPER_31 assembled-molecule 31 Chromosome CM104690.1 <> na Primary Assembly 1888378 na SUPER_32 assembled-molecule 32 Chromosome CM104691.1 <> na Primary Assembly 181560 na SUPER_33 assembled-molecule 33 Chromosome CM104692.1 <> na Primary Assembly 113173 na SUPER_34 assembled-molecule 34 Chromosome CM104693.1 <> na Primary Assembly 111634 na SUPER_35 assembled-molecule 35 Chromosome CM104694.1 <> na Primary Assembly 106406 na SUPER_Z assembled-molecule Z Chromosome CM104695.1 <> na Primary Assembly 72671965 na scaffold_44 unplaced-scaffold na na JAJQWJ020000037.1 <> na Primary Assembly 117669 na scaffold_53 unplaced-scaffold na na JAJQWJ020000038.1 <> na Primary Assembly 49069 na scaffold_51 unplaced-scaffold na na JAJQWJ020000039.1 <> na Primary Assembly 55832 na scaffold_49 unplaced-scaffold na na JAJQWJ020000040.1 <> na Primary Assembly 58731 na scaffold_66 unplaced-scaffold na na JAJQWJ020000041.1 <> na Primary Assembly 18710 na scaffold_62 unplaced-scaffold na na JAJQWJ020000042.1 <> na Primary Assembly 28669 na scaffold_40 unplaced-scaffold na na JAJQWJ020000043.1 <> na Primary Assembly 174454 na scaffold_69 unplaced-scaffold na na JAJQWJ020000044.1 <> na Primary Assembly 8356 na scaffold_64 unplaced-scaffold na na JAJQWJ020000045.1 <> na Primary Assembly 27888 na scaffold_34 unplaced-scaffold na na JAJQWJ020000046.1 <> na Primary Assembly 95768 na scaffold_57 unplaced-scaffold na na JAJQWJ020000047.1 <> na Primary Assembly 44945 na scaffold_65 unplaced-scaffold na na JAJQWJ020000048.1 <> na Primary Assembly 24748 na scaffold_60 unplaced-scaffold na na JAJQWJ020000049.1 <> na Primary Assembly 33150 na scaffold_58 unplaced-scaffold na na JAJQWJ020000050.1 <> na Primary Assembly 44896 na scaffold_54 unplaced-scaffold na na JAJQWJ020000051.1 <> na Primary Assembly 47312 na scaffold_59 unplaced-scaffold na na JAJQWJ020000052.1 <> na Primary Assembly 43228 na scaffold_41 unplaced-scaffold na na JAJQWJ020000053.1 <> na Primary Assembly 171350 na scaffold_43 unplaced-scaffold na na JAJQWJ020000054.1 <> na Primary Assembly 120179 na scaffold_68 unplaced-scaffold na na JAJQWJ020000055.1 <> na Primary Assembly 9318 na scaffold_37 unplaced-scaffold na na JAJQWJ020000056.1 <> na Primary Assembly 497980 na scaffold_67 unplaced-scaffold na na JAJQWJ020000057.1 <> na Primary Assembly 15212 na scaffold_55 unplaced-scaffold na na JAJQWJ020000058.1 <> na Primary Assembly 47039 na scaffold_50 unplaced-scaffold na na JAJQWJ020000059.1 <> na Primary Assembly 55922 na scaffold_33 unplaced-scaffold na na JAJQWJ020000060.1 <> na Primary Assembly 89116 na scaffold_61 unplaced-scaffold na na JAJQWJ020000061.1 <> na Primary Assembly 30055 na scaffold_63 unplaced-scaffold na na JAJQWJ020000062.1 <> na Primary Assembly 28083 na scaffold_70 unplaced-scaffold na na JAJQWJ020000063.1 <> na Primary Assembly 6938 na scaffold_56 unplaced-scaffold na na JAJQWJ020000064.1 <> na Primary Assembly 45644 na scaffold_52 unplaced-scaffold na na JAJQWJ020000065.1 <> na Primary Assembly 52971 na