# Assembly name: rActMar1.p # Organism name: Actinemys marmorata (Northwestern pond turtle) # Isolate: WTP2003 # Sex: male # Taxid: 335395 # BioSample: SAMN21436765 # BioProject: PRJNA778210 # Submitter: UCLA # Date: 2022-02-09 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JAJLPC01 # Assembly method: HiFiasm v. 0.15-r327; purge_dups v. 1.2.5; SALSA2 v. 2.2 # Expected final version: yes # Genome coverage: 30x # Sequencing technology: PacBio Sequel II; Illumina NovaSeq; Dovetail OmniC # RefSeq category: Representative Genome # GenBank assembly accession: GCA_022086475.1 # Linked assembly: GCA_022086895.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_022086485.1 Primary Assembly ## GCA_022086495.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SCAF_22 unplaced-scaffold na na JAJLPC010000001.1 <> na Primary Assembly 22910359 na SCAF_23 unplaced-scaffold na na JAJLPC010000002.1 <> na Primary Assembly 21021402 na SCAF_1 unplaced-scaffold na na JAJLPC010000003.1 <> na Primary Assembly 361952230 na SCAF_2 unplaced-scaffold na na JAJLPC010000004.1 <> na Primary Assembly 288855929 na SCAF_3 unplaced-scaffold na na JAJLPC010000005.1 <> na Primary Assembly 218412979 na SCAF_4 unplaced-scaffold na na JAJLPC010000006.1 <> na Primary Assembly 165026412 na SCAF_5 unplaced-scaffold na na JAJLPC010000007.1 <> na Primary Assembly 146229595 na SCAF_6 unplaced-scaffold na na JAJLPC010000008.1 <> na Primary Assembly 138369199 na SCAF_7 unplaced-scaffold na na JAJLPC010000009.1 <> na Primary Assembly 133807072 na SCAF_8 unplaced-scaffold na na JAJLPC010000010.1 <> na Primary Assembly 114076051 na SCAF_9 unplaced-scaffold na na JAJLPC010000011.1 <> na Primary Assembly 109567835 na SCAF_10 unplaced-scaffold na na JAJLPC010000012.1 <> na Primary Assembly 93309743 na SCAF_11 unplaced-scaffold na na JAJLPC010000013.1 <> na Primary Assembly 82381545 na SCAF_12 unplaced-scaffold na na JAJLPC010000014.1 <> na Primary Assembly 55987751 na SCAF_13 unplaced-scaffold na na JAJLPC010000015.1 <> na Primary Assembly 55911339 na SCAF_14 unplaced-scaffold na na JAJLPC010000016.1 <> na Primary Assembly 50406169 na SCAF_15 unplaced-scaffold na na JAJLPC010000017.1 <> na Primary Assembly 34972655 na SCAF_16 unplaced-scaffold na na JAJLPC010000018.1 <> na Primary Assembly 27972649 na SCAF_17 unplaced-scaffold na na JAJLPC010000019.1 <> na Primary Assembly 27795840 na SCAF_18 unplaced-scaffold na na JAJLPC010000020.1 <> na Primary Assembly 26605157 na SCAF_19 unplaced-scaffold na na JAJLPC010000021.1 <> na Primary Assembly 25122477 na SCAF_20 unplaced-scaffold na na JAJLPC010000022.1 <> na Primary Assembly 24622383 na SCAF_21 unplaced-scaffold na na JAJLPC010000023.1 <> na Primary Assembly 23159514 na SCAF_24 unplaced-scaffold na na JAJLPC010000024.1 <> na Primary Assembly 19317314 na SCAF_25 unplaced-scaffold na na JAJLPC010000025.1 <> na Primary Assembly 18235784 na SCAF_26 unplaced-scaffold na na JAJLPC010000026.1 <> na Primary Assembly 4071823 na SCAF_27 unplaced-scaffold na na JAJLPC010000027.1 <> na Primary Assembly 2863201 na SCAF_28 unplaced-scaffold na na JAJLPC010000028.1 <> na Primary Assembly 2449870 na SCAF_29 unplaced-scaffold na na JAJLPC010000029.1 <> na Primary Assembly 1507334 na SCAF_30 unplaced-scaffold na na JAJLPC010000030.1 <> na Primary Assembly 1302490 na SCAF_31 unplaced-scaffold na na JAJLPC010000031.1 <> na Primary Assembly 1039356 na SCAF_32 unplaced-scaffold na na JAJLPC010000032.1 <> na Primary Assembly 450281 na SCAF_33 unplaced-scaffold na na JAJLPC010000033.1 <> na Primary Assembly 347543 na SCAF_34 unplaced-scaffold na na JAJLPC010000034.1 <> na Primary Assembly 148717 na SCAF_35 unplaced-scaffold na na JAJLPC010000035.1 <> na Primary Assembly 123925 na SCAF_36 unplaced-scaffold na na JAJLPC010000036.1 <> na Primary Assembly 117067 na SCAF_37 unplaced-scaffold na na JAJLPC010000037.1 <> na Primary Assembly 111466 na SCAF_38 unplaced-scaffold na na JAJLPC010000038.1 <> na Primary Assembly 105709 na SCAF_39 unplaced-scaffold na na JAJLPC010000039.1 <> na Primary Assembly 97228 na SCAF_40 unplaced-scaffold na na JAJLPC010000040.1 <> na Primary Assembly 78835 na SCAF_41 unplaced-scaffold na na JAJLPC010000041.1 <> na Primary Assembly 68101 na SCAF_42 unplaced-scaffold na na JAJLPC010000042.1 <> na Primary Assembly 37488 na SCAF_43 unplaced-scaffold na na JAJLPC010000043.1 <> na Primary Assembly 34008 na SCAF_44 unplaced-scaffold na na JAJLPC010000044.1 <> na Primary Assembly 30974 na SCAF_45 unplaced-scaffold na na JAJLPC010000045.1 <> na Primary Assembly 30292 na SCAF_46 unplaced-scaffold na na JAJLPC010000046.1 <> na Primary Assembly 28483 na SCAF_47 unplaced-scaffold na na JAJLPC010000047.1 <> na Primary Assembly 27825 na mtDNA assembled-molecule MT Mitochondrion CM039065.1 <> na non-nuclear 17148 na