# Assembly name: bTroSur1.pri.cur # Organism name: Trogon surrucura (Suruca trogon) # Isolate: bTroSur1 # Sex: female # Taxid: 297711 # BioSample: SAMN22550082 # BioProject: PRJNA774295 # Submitter: Vertebrate Genomes Project # Date: 2021-11-05 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAJGST01 # Assembly method: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 7.0.1.66975; purge_dups v. 1.2.5; scaff10X v. 4.1.0; Bionano solve v. 3.4.0; Salsa2 v. 2.2; Arrow polishing pbcpp v. 1.9.0.1; Longranger Align v. 2.2.2; Deep variant polishing v. 1.1.0; gEVAL manual curation v. 2021-05-25; VGP pipeline v. 1.7 # Expected final version: no # Genome coverage: 78.0x # Sequencing technology: PacBio Sequel CLR; Illumina NovaSeq; Bionano Genomics Saphyr DLS; Arima Genomics Hi-C # RefSeq category: Representative Genome # GenBank assembly accession: GCA_020746105.1 # Linked assembly: GCA_020746095.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_020746115.1 Primary Assembly ## GCA_020746125.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM036617.1 <> na Primary Assembly 222214447 na SUPER_2 assembled-molecule 2 Chromosome CM036618.1 <> na Primary Assembly 127113889 na SUPER_3 assembled-molecule 3 Chromosome CM036619.1 <> na Primary Assembly 100503030 na SUPER_4 assembled-molecule 4 Chromosome CM036620.1 <> na Primary Assembly 82617956 na SUPER_5 assembled-molecule 5 Chromosome CM036621.1 <> na Primary Assembly 82433517 na SUPER_6 assembled-molecule 6 Chromosome CM036622.1 <> na Primary Assembly 60617194 na SUPER_7 assembled-molecule 7 Chromosome CM036623.1 <> na Primary Assembly 47452786 na SUPER_8 assembled-molecule 8 Chromosome CM036624.1 <> na Primary Assembly 34180213 na SUPER_9 assembled-molecule 9 Chromosome CM036625.1 <> na Primary Assembly 27349769 na SUPER_10 assembled-molecule 10 Chromosome CM036626.1 <> na Primary Assembly 22532472 na SUPER_11 assembled-molecule 11 Chromosome CM036627.1 <> na Primary Assembly 22245804 na SUPER_12 assembled-molecule 12 Chromosome CM036628.1 <> na Primary Assembly 21966273 na SUPER_13 assembled-molecule 13 Chromosome CM036629.1 <> na Primary Assembly 21697095 na SUPER_14 assembled-molecule 14 Chromosome CM036630.1 <> na Primary Assembly 20014507 na SUPER_15 assembled-molecule 15 Chromosome CM036631.1 <> na Primary Assembly 17610008 na SUPER_16 assembled-molecule 16 Chromosome CM036632.1 <> na Primary Assembly 17577491 na SUPER_17 assembled-molecule 17 Chromosome CM036633.1 <> na Primary Assembly 16237294 na SUPER_18 assembled-molecule 18 Chromosome CM036634.1 <> na Primary Assembly 15599291 na SUPER_19 assembled-molecule 19 Chromosome CM036635.1 <> na Primary Assembly 12955084 na SUPER_20 assembled-molecule 20 Chromosome CM036636.1 <> na Primary Assembly 12064406 na SUPER_21 assembled-molecule 21 Chromosome CM036637.1 <> na Primary Assembly 11711654 na SUPER_22 assembled-molecule 22 Chromosome CM036638.1 <> na Primary Assembly 7852303 na SUPER_23 assembled-molecule 23 Chromosome CM036639.1 <> na Primary Assembly 7701535 na SUPER_24 assembled-molecule 24 Chromosome CM036640.1 <> na Primary Assembly 7424572 na SUPER_25 assembled-molecule 25 Chromosome CM036641.1 <> na Primary Assembly 6757782 na SUPER_26 assembled-molecule 26 Chromosome CM036642.1 <> na Primary Assembly 6384310 na SUPER_27 assembled-molecule 27 Chromosome CM036643.1 <> na Primary Assembly 5785836 na SUPER_28 assembled-molecule 28 Chromosome CM036644.1 <> na Primary Assembly 5094946 na SUPER_29 assembled-molecule 29 Chromosome CM036645.1 <> na Primary Assembly 3179059 na SUPER_30 assembled-molecule 30 Chromosome CM036646.1 <> na Primary Assembly 2236425 na SUPER_31 assembled-molecule 31 Chromosome CM036647.1 <> na Primary Assembly 192418 na SUPER_32 assembled-molecule 32 Chromosome CM036648.1 <> na Primary Assembly 425252 na SUPER_33 assembled-molecule 33 Chromosome CM036649.1 <> na Primary Assembly 155072 na SUPER_34 assembled-molecule 34 Chromosome CM036650.1 <> na Primary Assembly 322756 na SUPER_35 assembled-molecule 35 Chromosome CM036651.1 <> na Primary Assembly 163099 na SUPER_36 assembled-molecule 36 Chromosome CM036652.1 <> na Primary Assembly 83204 na SUPER_37 assembled-molecule 37 Chromosome CM036653.1 <> na Primary Assembly 194935 na SUPER_38 assembled-molecule 38 Chromosome CM036654.1 <> na Primary Assembly 81129 na SUPER_39 assembled-molecule 39 Chromosome CM036655.1 <> na Primary Assembly 65809 na SUPER_40 assembled-molecule 40 Chromosome CM036656.1 <> na Primary Assembly 52311 na SUPER_W assembled-molecule W Chromosome CM036657.1 <> na Primary Assembly 9310055 na SUPER_Z assembled-molecule Z Chromosome CM036658.1 <> na Primary Assembly 87900276 na SUPER_2_unloc_3 unlocalized-scaffold 2 Chromosome JAJGST010000003.1 <> na Primary Assembly 209262 na SUPER_2_unloc_2 unlocalized-scaffold 2 Chromosome JAJGST010000004.1 <> na Primary Assembly 235440 na SUPER_2_unloc_1 unlocalized-scaffold 2 Chromosome JAJGST010000005.1 <> na Primary Assembly 252622 na SUPER_31_unloc_2 unlocalized-scaffold 31 Chromosome JAJGST010000050.1 <> na Primary Assembly 142433 na SUPER_31_unloc_7 unlocalized-scaffold 31 Chromosome JAJGST010000051.1 <> na Primary Assembly 13564 na SUPER_31_unloc_3 unlocalized-scaffold 31 Chromosome JAJGST010000053.1 <> na Primary Assembly 75886 na SUPER_31_unloc_6 unlocalized-scaffold 31 Chromosome JAJGST010000054.1 <> na Primary Assembly 37351 na SUPER_31_unloc_1 unlocalized-scaffold 31 Chromosome JAJGST010000055.1 <> na Primary Assembly 143213 na SUPER_31_unloc_4 unlocalized-scaffold 31 Chromosome JAJGST010000056.1 <> na Primary Assembly 52973 na SUPER_31_unloc_5 unlocalized-scaffold 31 Chromosome JAJGST010000057.1 <> na Primary Assembly 43791 na SUPER_31_unloc_8 unlocalized-scaffold 31 Chromosome JAJGST010000058.1 <> na Primary Assembly 12083 na SUPER_32_unloc_1 unlocalized-scaffold 32 Chromosome JAJGST010000059.1 <> na Primary Assembly 215325 na SUPER_33_unloc_1 unlocalized-scaffold 33 Chromosome JAJGST010000065.1 <> na Primary Assembly 155015 na SUPER_33_unloc_2 unlocalized-scaffold 33 Chromosome JAJGST010000066.1 <> na Primary Assembly 132537 na SUPER_34_unloc_1 unlocalized-scaffold 34 Chromosome JAJGST010000062.1 <> na Primary Assembly 20022 na SUPER_34_unloc_2 unlocalized-scaffold 34 Chromosome JAJGST010000063.1 <> na Primary Assembly 14126 na SUPER_35_unloc_1 unlocalized-scaffold 35 Chromosome JAJGST010000048.1 <> na Primary Assembly 34112 na SUPER_36_unloc_1 unlocalized-scaffold 36 Chromosome JAJGST010000068.1 <> na Primary Assembly 60390 na SUPER_36_unloc_2 unlocalized-scaffold 36 Chromosome JAJGST010000069.1 <> na Primary Assembly 52144 na SUPER_W_unloc_6 unlocalized-scaffold W Chromosome JAJGST010000016.1 <> na Primary Assembly 250483 na SUPER_W_unloc_5 unlocalized-scaffold W Chromosome JAJGST010000017.1 <> na Primary Assembly 289646 na SUPER_W_unloc_4 unlocalized-scaffold W Chromosome JAJGST010000018.1 <> na Primary Assembly 293992 na SUPER_W_unloc_2 unlocalized-scaffold W Chromosome JAJGST010000019.1 <> na Primary Assembly 2891825 na SUPER_W_unloc_3 unlocalized-scaffold W Chromosome JAJGST010000020.1 <> na Primary Assembly 2761549 na SUPER_W_unloc_1 unlocalized-scaffold W Chromosome JAJGST010000022.1 <> na Primary Assembly 3870694 na SUPER_Z_unloc_4 unlocalized-scaffold Z Chromosome JAJGST010000011.1 <> na Primary Assembly 44047 na SUPER_Z_unloc_3 unlocalized-scaffold Z Chromosome JAJGST010000012.1 <> na Primary Assembly 87051 na SUPER_Z_unloc_2 unlocalized-scaffold Z Chromosome JAJGST010000013.1 <> na Primary Assembly 132629 na SUPER_Z_unloc_1 unlocalized-scaffold Z Chromosome JAJGST010000014.1 <> na Primary Assembly 151308 na scaffold_58_ctg1 unplaced-scaffold na na JAJGST010000073.1 <> na Primary Assembly 382545 na scaffold_71_ctg1 unplaced-scaffold na na JAJGST010000074.1 <> na Primary Assembly 192934 na scaffold_73_ctg1 unplaced-scaffold na na JAJGST010000075.1 <> na Primary Assembly 186682 na scaffold_84_ctg1 unplaced-scaffold na na JAJGST010000076.1 <> na Primary Assembly 129269 na scaffold_85_ctg1 unplaced-scaffold na na JAJGST010000077.1 <> na Primary Assembly 122009 na scaffold_86_ctg1 unplaced-scaffold na na JAJGST010000078.1 <> na Primary Assembly 121110 na scaffold_87_ctg1 unplaced-scaffold na na JAJGST010000079.1 <> na Primary Assembly 121026 na scaffold_88_ctg1 unplaced-scaffold na na JAJGST010000080.1 <> na Primary Assembly 118184 na scaffold_89_ctg1 unplaced-scaffold na na JAJGST010000081.1 <> na Primary Assembly 115587 na scaffold_90_ctg1 unplaced-scaffold na na JAJGST010000082.1 <> na Primary Assembly 113561 na scaffold_91_ctg1 unplaced-scaffold na na JAJGST010000083.1 <> na Primary Assembly 111293 na scaffold_92_ctg1 unplaced-scaffold na na JAJGST010000084.1 <> na Primary Assembly 108945 na scaffold_93_ctg1 unplaced-scaffold na na JAJGST010000085.1 <> na Primary Assembly 108518 na scaffold_96_ctg1 unplaced-scaffold na na JAJGST010000086.1 <> na Primary Assembly 100277 na scaffold_97_ctg1 unplaced-scaffold na na JAJGST010000087.1 <> na Primary Assembly 99713 na scaffold_98_ctg1 unplaced-scaffold na na JAJGST010000088.1 <> na Primary Assembly 97212 na scaffold_101_ctg1 unplaced-scaffold na na JAJGST010000089.1 <> na Primary Assembly 91875 na scaffold_106_ctg1 unplaced-scaffold na na JAJGST010000090.1 <> na Primary Assembly 82454 na scaffold_107_ctg1 unplaced-scaffold na na JAJGST010000091.1 <> na Primary Assembly 81617 na scaffold_109_ctg1 unplaced-scaffold na na JAJGST010000092.1 <> na Primary Assembly 76726 na scaffold_111_ctg1 unplaced-scaffold na na JAJGST010000093.1 <> na Primary Assembly 72808 na scaffold_112_ctg1 unplaced-scaffold na na JAJGST010000094.1 <> na Primary Assembly 71787 na scaffold_115_ctg1 unplaced-scaffold na na JAJGST010000095.1 <> na Primary Assembly 65607 na scaffold_117_ctg1 unplaced-scaffold na na JAJGST010000096.1 <> na Primary Assembly 64207 na scaffold_118_ctg1 unplaced-scaffold na na JAJGST010000097.1 <> na Primary Assembly 63508 na scaffold_119_ctg1 unplaced-scaffold na na JAJGST010000098.1 <> na Primary Assembly 63301 na scaffold_122_ctg1 unplaced-scaffold na na JAJGST010000099.1 <> na Primary Assembly 59596 na scaffold_123_ctg1 unplaced-scaffold na na JAJGST010000100.1 <> na Primary Assembly 57387 na scaffold_124_ctg1 unplaced-scaffold na na JAJGST010000101.1 <> na Primary Assembly 54669 na scaffold_125_ctg1 unplaced-scaffold na na JAJGST010000102.1 <> na Primary Assembly 54667 na scaffold_126_ctg1 unplaced-scaffold na na JAJGST010000103.1 <> na Primary Assembly 54951 na scaffold_127_ctg1 unplaced-scaffold na na JAJGST010000104.1 <> na Primary Assembly 54257 na scaffold_128_ctg1 unplaced-scaffold na na JAJGST010000105.1 <> na Primary Assembly 53401 na scaffold_132_ctg1 unplaced-scaffold na na JAJGST010000106.1 <> na Primary Assembly 50887 na scaffold_134_ctg1 unplaced-scaffold na na JAJGST010000107.1 <> na Primary Assembly 45138 na scaffold_137_ctg1 unplaced-scaffold na na JAJGST010000108.1 <> na Primary Assembly 43678 na scaffold_138_ctg1 unplaced-scaffold na na JAJGST010000109.1 <> na Primary Assembly 43506 na scaffold_139_ctg1 unplaced-scaffold na na JAJGST010000110.1 <> na Primary Assembly 43151 na scaffold_140_ctg1 unplaced-scaffold na na JAJGST010000111.1 <> na Primary Assembly 42645 na scaffold_141_ctg1 unplaced-scaffold na na JAJGST010000112.1 <> na Primary Assembly 39789 na scaffold_142_ctg1 unplaced-scaffold na na JAJGST010000113.1 <> na Primary Assembly 39654 na scaffold_145_ctg1 unplaced-scaffold na na JAJGST010000114.1 <> na Primary Assembly 35540 na scaffold_146_ctg1 unplaced-scaffold na na JAJGST010000115.1 <> na Primary Assembly 36143 na scaffold_147_ctg1 unplaced-scaffold na na JAJGST010000116.1 <> na Primary Assembly 34575 na scaffold_148_ctg1 unplaced-scaffold na na JAJGST010000117.1 <> na Primary Assembly 34506 na scaffold_149_ctg1 unplaced-scaffold na na JAJGST010000118.1 <> na Primary Assembly 34002 na scaffold_151_ctg1 unplaced-scaffold na na JAJGST010000119.1 <> na Primary Assembly 32980 na scaffold_152_ctg1 unplaced-scaffold na na JAJGST010000120.1 <> na Primary Assembly 32376 na scaffold_153_ctg1 unplaced-scaffold na na JAJGST010000121.1 <> na Primary Assembly 32083 na scaffold_154_ctg1 unplaced-scaffold na na JAJGST010000122.1 <> na Primary Assembly 31666 na scaffold_155_ctg1 unplaced-scaffold na na JAJGST010000123.1 <> na Primary Assembly 31608 na scaffold_156_ctg1 unplaced-scaffold na na JAJGST010000124.1 <> na Primary Assembly 31009 na scaffold_157_ctg1 unplaced-scaffold na na JAJGST010000125.1 <> na Primary Assembly 29898 na scaffold_158_ctg1 unplaced-scaffold na na JAJGST010000126.1 <> na Primary Assembly 27910 na scaffold_159_ctg1 unplaced-scaffold na na JAJGST010000127.1 <> na Primary Assembly 26949 na scaffold_160_ctg1 unplaced-scaffold na na JAJGST010000128.1 <> na Primary Assembly 26686 na scaffold_161_ctg1 unplaced-scaffold na na JAJGST010000129.1 <> na Primary Assembly 26706 na scaffold_162_ctg1 unplaced-scaffold na na JAJGST010000130.1 <> na Primary Assembly 26508 na scaffold_163_ctg1 unplaced-scaffold na na JAJGST010000131.1 <> na Primary Assembly 26508 na scaffold_164_ctg1 unplaced-scaffold na na JAJGST010000132.1 <> na Primary Assembly 26384 na scaffold_166_ctg1 unplaced-scaffold na na JAJGST010000133.1 <> na Primary Assembly 24464 na scaffold_167_ctg1 unplaced-scaffold na na JAJGST010000134.1 <> na Primary Assembly 23798 na scaffold_168_ctg1 unplaced-scaffold na na JAJGST010000135.1 <> na Primary Assembly 23355 na scaffold_169_ctg1 unplaced-scaffold na na JAJGST010000136.1 <> na Primary Assembly 22756 na scaffold_170_ctg1 unplaced-scaffold na na JAJGST010000137.1 <> na Primary Assembly 22790 na scaffold_171_ctg1 unplaced-scaffold na na JAJGST010000138.1 <> na Primary Assembly 22282 na scaffold_172_ctg1 unplaced-scaffold na na JAJGST010000139.1 <> na Primary Assembly 21633 na scaffold_173_ctg1 unplaced-scaffold na na JAJGST010000140.1 <> na Primary Assembly 21683 na scaffold_174_ctg1 unplaced-scaffold na na JAJGST010000141.1 <> na Primary Assembly 21349 na scaffold_175_ctg1 unplaced-scaffold na na JAJGST010000142.1 <> na Primary Assembly 21113 na scaffold_176_ctg1 unplaced-scaffold na na JAJGST010000143.1 <> na Primary Assembly 20735 na scaffold_177_ctg1 unplaced-scaffold na na JAJGST010000144.1 <> na Primary Assembly 20037 na scaffold_179_ctg1 unplaced-scaffold na na JAJGST010000145.1 <> na Primary Assembly 19364 na scaffold_180_ctg1 unplaced-scaffold na na JAJGST010000146.1 <> na Primary Assembly 18884 na scaffold_181_ctg1 unplaced-scaffold na na JAJGST010000147.1 <> na Primary Assembly 18823 na scaffold_182_ctg1 unplaced-scaffold na na JAJGST010000148.1 <> na Primary Assembly 18660 na scaffold_183_ctg1 unplaced-scaffold na na JAJGST010000149.1 <> na Primary Assembly 18525 na scaffold_184_ctg1 unplaced-scaffold na na JAJGST010000150.1 <> na Primary Assembly 18413 na scaffold_185_ctg1 unplaced-scaffold na na JAJGST010000151.1 <> na Primary Assembly 18139 na scaffold_186_ctg1 unplaced-scaffold na na JAJGST010000152.1 <> na Primary Assembly 17851 na scaffold_187_ctg1 unplaced-scaffold na na JAJGST010000153.1 <> na Primary Assembly 17837 na scaffold_188_ctg1 unplaced-scaffold na na JAJGST010000154.1 <> na Primary Assembly 17645 na scaffold_165_ctg1 unplaced-scaffold na na JAJGST010000155.1 <> na Primary Assembly 25748 na scaffold_189_ctg1 unplaced-scaffold na na JAJGST010000156.1 <> na Primary Assembly 16741 na scaffold_190_ctg1 unplaced-scaffold na na JAJGST010000157.1 <> na Primary Assembly 15838 na scaffold_191_ctg1 unplaced-scaffold na na JAJGST010000158.1 <> na Primary Assembly 15323 na scaffold_192_ctg1 unplaced-scaffold na na JAJGST010000159.1 <> na Primary Assembly 14884 na scaffold_194_ctg1 unplaced-scaffold na na JAJGST010000160.1 <> na Primary Assembly 13756 na scaffold_196_ctg1 unplaced-scaffold na na JAJGST010000161.1 <> na Primary Assembly 13295 na scaffold_197_ctg1 unplaced-scaffold na na JAJGST010000162.1 <> na Primary Assembly 13098 na scaffold_198_ctg1 unplaced-scaffold na na JAJGST010000163.1 <> na Primary Assembly 13040 na scaffold_199_ctg1 unplaced-scaffold na na JAJGST010000164.1 <> na Primary Assembly 12745 na scaffold_200_ctg1 unplaced-scaffold na na JAJGST010000165.1 <> na Primary Assembly 12415 na scaffold_202_ctg1 unplaced-scaffold na na JAJGST010000166.1 <> na Primary Assembly 11651 na scaffold_203_ctg1 unplaced-scaffold na na JAJGST010000167.1 <> na Primary Assembly 8837 na scaffold_204_ctg1 unplaced-scaffold na na JAJGST010000168.1 <> na Primary Assembly 8530 na scaffold_205_ctg1 unplaced-scaffold na na JAJGST010000169.1 <> na Primary Assembly 6966 na scaffold_206_ctg1 unplaced-scaffold na na JAJGST010000170.1 <> na Primary Assembly 6174 na scaffold_207_ctg1 unplaced-scaffold na na JAJGST010000171.1 <> na Primary Assembly 5657 na scaffold_208_ctg1 unplaced-scaffold na na JAJGST010000172.1 <> na Primary Assembly 5541 na scaffold_209_ctg1 unplaced-scaffold na na JAJGST010000173.1 <> na Primary Assembly 5346 na scaffold_210_ctg1 unplaced-scaffold na na JAJGST010000174.1 <> na Primary Assembly 4784 na scaffold_211_ctg1 unplaced-scaffold na na JAJGST010000175.1 <> na Primary Assembly 4730 na scaffold_212_ctg1 unplaced-scaffold na na JAJGST010000176.1 <> na Primary Assembly 4669 na scaffold_213_ctg1 unplaced-scaffold na na JAJGST010000177.1 <> na Primary Assembly 4670 na scaffold_214_ctg1 unplaced-scaffold na na JAJGST010000178.1 <> na Primary Assembly 4407 na scaffold_215_ctg1 unplaced-scaffold na na JAJGST010000179.1 <> na Primary Assembly 4424 na scaffold_216_ctg1 unplaced-scaffold na na JAJGST010000180.1 <> na Primary Assembly 3512 na scaffold_217_ctg1 unplaced-scaffold na na JAJGST010000181.1 <> na Primary Assembly 2178 na scaffold_218_ctg1 unplaced-scaffold na na JAJGST010000182.1 <> na Primary Assembly 1349 na bTroSur1 assembled-molecule MT Mitochondrion CM036751.1 <> na non-nuclear 22126 na