# Assembly name: bHemCom1.pri.cur # Organism name: Hemiprocne comata (birds) # Isolate: bHemCom1 # Sex: female # Taxid: 243314 # BioSample: SAMN22588383 # BioProject: PRJNA774831 # Submitter: Vertebrate Genomes Project # Date: 2021-11-05 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAJGQW01 # Assembly method: FALCON v. 2018.31.08-03.06; FALCON unzip v. 7.0.1.66975; purge_dups v. 1.2.5; scaff10X v. 4.1.0; Bionano solve v. 3.4.0; Salsa2 v. 2.2; Arrow polishing pbcpp v. 1.9.0.1; Longranger Align v. 2.2.2; Deepvariant polishing v. 1.1.0; gEVAL manual curation v. 2021-09-24; VGP pipeline v. 1.7 # Expected final version: no # Genome coverage: 80.12x # Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Bionano Genomics DLS; Arima Genomics Hi-C # RefSeq category: Representative Genome # GenBank assembly accession: GCA_020745705.1 # Linked assembly: GCA_020745695.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_020745745.1 Primary Assembly ## GCA_020745755.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM036586.1 <> na Primary Assembly 218408531 na SUPER_2 assembled-molecule 2 Chromosome CM036587.1 <> na Primary Assembly 165985334 na SUPER_3 assembled-molecule 3 Chromosome CM036588.1 <> na Primary Assembly 123375213 na SUPER_4 assembled-molecule 4 Chromosome CM036589.1 <> na Primary Assembly 81501430 na SUPER_5 assembled-molecule 5 Chromosome CM036590.1 <> na Primary Assembly 69458436 na SUPER_6 assembled-molecule 6 Chromosome CM036591.1 <> na Primary Assembly 40666778 na SUPER_7 assembled-molecule 7 Chromosome CM036592.1 <> na Primary Assembly 39026352 na SUPER_8 assembled-molecule 8 Chromosome CM036593.1 <> na Primary Assembly 33372975 na SUPER_9 assembled-molecule 9 Chromosome CM036594.1 <> na Primary Assembly 27531959 na SUPER_10 assembled-molecule 10 Chromosome CM036595.1 <> na Primary Assembly 23488073 na SUPER_11 assembled-molecule 11 Chromosome CM036596.1 <> na Primary Assembly 22294168 na SUPER_12 assembled-molecule 12 Chromosome CM036597.1 <> na Primary Assembly 21835391 na SUPER_13 assembled-molecule 13 Chromosome CM036598.1 <> na Primary Assembly 21775522 na SUPER_14 assembled-molecule 14 Chromosome CM036599.1 <> na Primary Assembly 19995425 na SUPER_15 assembled-molecule 15 Chromosome CM036600.1 <> na Primary Assembly 17863116 na SUPER_16 assembled-molecule 16 Chromosome CM036601.1 <> na Primary Assembly 16555804 na SUPER_17 assembled-molecule 17 Chromosome CM036602.1 <> na Primary Assembly 15440947 na SUPER_18 assembled-molecule 18 Chromosome CM036603.1 <> na Primary Assembly 13355127 na SUPER_19 assembled-molecule 19 Chromosome CM036604.1 <> na Primary Assembly 12252461 na SUPER_20 assembled-molecule 20 Chromosome CM036605.1 <> na Primary Assembly 12085378 na SUPER_21 assembled-molecule 21 Chromosome CM036606.1 <> na Primary Assembly 8563664 na SUPER_22 assembled-molecule 22 Chromosome CM036607.1 <> na Primary Assembly 7998468 na SUPER_23 assembled-molecule 23 Chromosome CM036608.1 <> na Primary Assembly 7399747 na SUPER_24 assembled-molecule 24 Chromosome CM036609.1 <> na Primary Assembly 7062562 na SUPER_25 assembled-molecule 25 Chromosome CM036610.1 <> na Primary Assembly 7247244 na SUPER_26 assembled-molecule 26 Chromosome CM036611.1 <> na Primary Assembly 6504850 na SUPER_27 assembled-molecule 27 Chromosome CM036612.1 <> na Primary Assembly 5526636 na SUPER_28 assembled-molecule 28 Chromosome CM036613.1 <> na Primary Assembly 2969064 na SUPER_29 assembled-molecule 29 Chromosome CM036614.1 <> na Primary Assembly 2298637 na SUPER_W assembled-molecule W Chromosome CM036615.1 <> na Primary Assembly 17593551 na SUPER_Z assembled-molecule Z Chromosome CM036616.1 <> na Primary Assembly 91346199 na scaffold_100_ctg1 unplaced-scaffold na na JAJGQW010000033.1 <> na Primary Assembly 52248 na scaffold_101_ctg1 unplaced-scaffold na na JAJGQW010000034.1 <> na Primary Assembly 50132 na scaffold_102_ctg1 unplaced-scaffold na na JAJGQW010000035.1 <> na Primary Assembly 49279 na scaffold_103_ctg1 unplaced-scaffold na na JAJGQW010000036.1 <> na Primary Assembly 49288 na scaffold_104_ctg1 unplaced-scaffold na na JAJGQW010000037.1 <> na Primary Assembly 49165 na scaffold_105_ctg1 unplaced-scaffold na na JAJGQW010000038.1 <> na Primary Assembly 46578 na scaffold_106_ctg1 unplaced-scaffold na na JAJGQW010000039.1 <> na Primary Assembly 44190 na scaffold_107_ctg1 unplaced-scaffold na na JAJGQW010000040.1 <> na Primary Assembly 42092 na scaffold_108_ctg1 unplaced-scaffold na na JAJGQW010000041.1 <> na Primary Assembly 40545 na scaffold_109_ctg1 unplaced-scaffold na na JAJGQW010000042.1 <> na Primary Assembly 39962 na scaffold_110_ctg1 unplaced-scaffold na na JAJGQW010000043.1 <> na Primary Assembly 38876 na scaffold_111_ctg1 unplaced-scaffold na na JAJGQW010000044.1 <> na Primary Assembly 37711 na scaffold_112_ctg1 unplaced-scaffold na na JAJGQW010000045.1 <> na Primary Assembly 36505 na scaffold_113_ctg1 unplaced-scaffold na na JAJGQW010000046.1 <> na Primary Assembly 36495 na scaffold_114_ctg1 unplaced-scaffold na na JAJGQW010000047.1 <> na Primary Assembly 35712 na scaffold_115_ctg1 unplaced-scaffold na na JAJGQW010000048.1 <> na Primary Assembly 35239 na scaffold_116_ctg1 unplaced-scaffold na na JAJGQW010000049.1 <> na Primary Assembly 34698 na scaffold_117_ctg1 unplaced-scaffold na na JAJGQW010000050.1 <> na Primary Assembly 33999 na scaffold_118_ctg1 unplaced-scaffold na na JAJGQW010000051.1 <> na Primary Assembly 33488 na scaffold_119_ctg1 unplaced-scaffold na na JAJGQW010000052.1 <> na Primary Assembly 33345 na scaffold_120_ctg1 unplaced-scaffold na na JAJGQW010000053.1 <> na Primary Assembly 32552 na scaffold_121_ctg1 unplaced-scaffold na na JAJGQW010000054.1 <> na Primary Assembly 31109 na scaffold_122_ctg1 unplaced-scaffold na na JAJGQW010000055.1 <> na Primary Assembly 31143 na scaffold_123_ctg1 unplaced-scaffold na na JAJGQW010000056.1 <> na Primary Assembly 30860 na scaffold_124_ctg1 unplaced-scaffold na na JAJGQW010000057.1 <> na Primary Assembly 30685 na scaffold_125_ctg1 unplaced-scaffold na na JAJGQW010000058.1 <> na Primary Assembly 30188 na scaffold_126_ctg1 unplaced-scaffold na na JAJGQW010000059.1 <> na Primary Assembly 29427 na scaffold_127_ctg1 unplaced-scaffold na na JAJGQW010000060.1 <> na Primary Assembly 29180 na scaffold_128_ctg1 unplaced-scaffold na na JAJGQW010000061.1 <> na Primary Assembly 29202 na scaffold_129_ctg1 unplaced-scaffold na na JAJGQW010000062.1 <> na Primary Assembly 26841 na scaffold_130_ctg1 unplaced-scaffold na na JAJGQW010000063.1 <> na Primary Assembly 26712 na scaffold_131_ctg1 unplaced-scaffold na na JAJGQW010000064.1 <> na Primary Assembly 26654 na scaffold_132_ctg1 unplaced-scaffold na na JAJGQW010000065.1 <> na Primary Assembly 26537 na scaffold_133_ctg1 unplaced-scaffold na na JAJGQW010000066.1 <> na Primary Assembly 25858 na scaffold_134_ctg1 unplaced-scaffold na na JAJGQW010000067.1 <> na Primary Assembly 23875 na scaffold_135_ctg1 unplaced-scaffold na na JAJGQW010000068.1 <> na Primary Assembly 21688 na scaffold_136_ctg1 unplaced-scaffold na na JAJGQW010000069.1 <> na Primary Assembly 21544 na scaffold_137_ctg1 unplaced-scaffold na na JAJGQW010000070.1 <> na Primary Assembly 20649 na scaffold_138_ctg1 unplaced-scaffold na na JAJGQW010000071.1 <> na Primary Assembly 20284 na scaffold_139_ctg1 unplaced-scaffold na na JAJGQW010000072.1 <> na Primary Assembly 19963 na scaffold_140_ctg1 unplaced-scaffold na na JAJGQW010000073.1 <> na Primary Assembly 19721 na scaffold_141_ctg1 unplaced-scaffold na na JAJGQW010000074.1 <> na Primary Assembly 19351 na scaffold_142_ctg1 unplaced-scaffold na na JAJGQW010000075.1 <> na Primary Assembly 18570 na scaffold_143_ctg1 unplaced-scaffold na na JAJGQW010000076.1 <> na Primary Assembly 18046 na scaffold_144_ctg1 unplaced-scaffold na na JAJGQW010000077.1 <> na Primary Assembly 17769 na scaffold_145_ctg1 unplaced-scaffold na na JAJGQW010000078.1 <> na Primary Assembly 17198 na scaffold_146_ctg1 unplaced-scaffold na na JAJGQW010000079.1 <> na Primary Assembly 16895 na scaffold_147_ctg1 unplaced-scaffold na na JAJGQW010000080.1 <> na Primary Assembly 16764 na scaffold_148_ctg1 unplaced-scaffold na na JAJGQW010000081.1 <> na Primary Assembly 16515 na scaffold_149_ctg1 unplaced-scaffold na na JAJGQW010000082.1 <> na Primary Assembly 16500 na scaffold_150_ctg1 unplaced-scaffold na na JAJGQW010000083.1 <> na Primary Assembly 15536 na scaffold_151_ctg1 unplaced-scaffold na na JAJGQW010000084.1 <> na Primary Assembly 15232 na scaffold_152_ctg1 unplaced-scaffold na na JAJGQW010000085.1 <> na Primary Assembly 14932 na scaffold_153_ctg1 unplaced-scaffold na na JAJGQW010000086.1 <> na Primary Assembly 13867 na scaffold_154_ctg1 unplaced-scaffold na na JAJGQW010000087.1 <> na Primary Assembly 13578 na scaffold_155_ctg1 unplaced-scaffold na na JAJGQW010000088.1 <> na Primary Assembly 13583 na scaffold_156_ctg1 unplaced-scaffold na na JAJGQW010000089.1 <> na Primary Assembly 13560 na scaffold_157_ctg1 unplaced-scaffold na na JAJGQW010000090.1 <> na Primary Assembly 13388 na scaffold_158_ctg1 unplaced-scaffold na na JAJGQW010000091.1 <> na Primary Assembly 13360 na scaffold_159_ctg1 unplaced-scaffold na na JAJGQW010000092.1 <> na Primary Assembly 12499 na scaffold_160_ctg1 unplaced-scaffold na na JAJGQW010000093.1 <> na Primary Assembly 12343 na scaffold_161_ctg1 unplaced-scaffold na na JAJGQW010000094.1 <> na Primary Assembly 12346 na scaffold_162_ctg1 unplaced-scaffold na na JAJGQW010000095.1 <> na Primary Assembly 11916 na scaffold_163_ctg1 unplaced-scaffold na na JAJGQW010000096.1 <> na Primary Assembly 11105 na scaffold_164_ctg1 unplaced-scaffold na na JAJGQW010000097.1 <> na Primary Assembly 10812 na scaffold_165_ctg1 unplaced-scaffold na na JAJGQW010000098.1 <> na Primary Assembly 10107 na scaffold_166_ctg1 unplaced-scaffold na na JAJGQW010000099.1 <> na Primary Assembly 9479 na scaffold_167_ctg1 unplaced-scaffold na na JAJGQW010000100.1 <> na Primary Assembly 9493 na scaffold_168_ctg1 unplaced-scaffold na na JAJGQW010000101.1 <> na Primary Assembly 9423 na scaffold_169_ctg1 unplaced-scaffold na na JAJGQW010000102.1 <> na Primary Assembly 9384 na scaffold_170_ctg1 unplaced-scaffold na na JAJGQW010000103.1 <> na Primary Assembly 9271 na scaffold_171_ctg1 unplaced-scaffold na na JAJGQW010000104.1 <> na Primary Assembly 9099 na scaffold_172_ctg1 unplaced-scaffold na na JAJGQW010000105.1 <> na Primary Assembly 8920 na scaffold_173_ctg1 unplaced-scaffold na na JAJGQW010000106.1 <> na Primary Assembly 8470 na scaffold_174_ctg1 unplaced-scaffold na na JAJGQW010000107.1 <> na Primary Assembly 8107 na scaffold_175_ctg1 unplaced-scaffold na na JAJGQW010000108.1 <> na Primary Assembly 7833 na scaffold_176_ctg1 unplaced-scaffold na na JAJGQW010000109.1 <> na Primary Assembly 7772 na scaffold_177_ctg1 unplaced-scaffold na na JAJGQW010000110.1 <> na Primary Assembly 7306 na scaffold_178_ctg1 unplaced-scaffold na na JAJGQW010000111.1 <> na Primary Assembly 7043 na scaffold_179_ctg1 unplaced-scaffold na na JAJGQW010000112.1 <> na Primary Assembly 6906 na scaffold_180_ctg1 unplaced-scaffold na na JAJGQW010000113.1 <> na Primary Assembly 6407 na scaffold_181_ctg1 unplaced-scaffold na na JAJGQW010000114.1 <> na Primary Assembly 5550 na scaffold_182_ctg1 unplaced-scaffold na na JAJGQW010000115.1 <> na Primary Assembly 5214 na scaffold_183_ctg1 unplaced-scaffold na na JAJGQW010000116.1 <> na Primary Assembly 5007 na scaffold_184_ctg1 unplaced-scaffold na na JAJGQW010000117.1 <> na Primary Assembly 4488 na scaffold_185_ctg1 unplaced-scaffold na na JAJGQW010000118.1 <> na Primary Assembly 3732 na scaffold_186_ctg1 unplaced-scaffold na na JAJGQW010000119.1 <> na Primary Assembly 2775 na scaffold_187_ctg1 unplaced-scaffold na na JAJGQW010000120.1 <> na Primary Assembly 2527 na scaffold_188_ctg1 unplaced-scaffold na na JAJGQW010000121.1 <> na Primary Assembly 2510 na scaffold_189_ctg1 unplaced-scaffold na na JAJGQW010000122.1 <> na Primary Assembly 1765 na scaffold_190_ctg1 unplaced-scaffold na na JAJGQW010000123.1 <> na Primary Assembly 420 na scaffold_60_ctg1 unplaced-scaffold na na JAJGQW010000124.1 <> na Primary Assembly 108395 na scaffold_68_ctg1 unplaced-scaffold na na JAJGQW010000125.1 <> na Primary Assembly 201760 na scaffold_70_ctg1 unplaced-scaffold na na JAJGQW010000126.1 <> na Primary Assembly 147282 na scaffold_71_ctg1 unplaced-scaffold na na JAJGQW010000127.1 <> na Primary Assembly 142977 na scaffold_75_ctg1 unplaced-scaffold na na JAJGQW010000128.1 <> na Primary Assembly 126067 na scaffold_77_ctg1 unplaced-scaffold na na JAJGQW010000129.1 <> na Primary Assembly 124100 na scaffold_78_ctg1 unplaced-scaffold na na JAJGQW010000130.1 <> na Primary Assembly 118580 na scaffold_80_ctg1 unplaced-scaffold na na JAJGQW010000131.1 <> na Primary Assembly 105509 na scaffold_81_ctg1 unplaced-scaffold na na JAJGQW010000132.1 <> na Primary Assembly 95678 na scaffold_82_ctg1 unplaced-scaffold na na JAJGQW010000133.1 <> na Primary Assembly 94758 na scaffold_83_ctg1 unplaced-scaffold na na JAJGQW010000134.1 <> na Primary Assembly 92021 na scaffold_84_ctg1 unplaced-scaffold na na JAJGQW010000135.1 <> na Primary Assembly 84257 na scaffold_88_ctg1 unplaced-scaffold na na JAJGQW010000136.1 <> na Primary Assembly 76296 na scaffold_90_ctg1 unplaced-scaffold na na JAJGQW010000137.1 <> na Primary Assembly 73681 na scaffold_91_ctg1 unplaced-scaffold na na JAJGQW010000138.1 <> na Primary Assembly 68161 na scaffold_92_ctg1 unplaced-scaffold na na JAJGQW010000139.1 <> na Primary Assembly 65347 na scaffold_93_ctg1 unplaced-scaffold na na JAJGQW010000140.1 <> na Primary Assembly 59830 na scaffold_94_ctg1 unplaced-scaffold na na JAJGQW010000141.1 <> na Primary Assembly 59049 na scaffold_95_ctg1 unplaced-scaffold na na JAJGQW010000142.1 <> na Primary Assembly 56775 na scaffold_96_ctg1 unplaced-scaffold na na JAJGQW010000143.1 <> na Primary Assembly 55024 na scaffold_97_ctg1 unplaced-scaffold na na JAJGQW010000144.1 <> na Primary Assembly 53345 na scaffold_98_ctg1 unplaced-scaffold na na JAJGQW010000145.1 <> na Primary Assembly 53585 na scaffold_99_ctg1 unplaced-scaffold na na JAJGQW010000146.1 <> na Primary Assembly 53530 na bHemCom1 assembled-molecule MT Mitochondrion CM036713.1 <> na non-nuclear 19122 na