# Assembly name: mLemCat1.pri # Organism name: Lemur catta (Ring-tailed lemur) # Isolate: mLemCat1 # Sex: male # Taxid: 9447 # BioSample: SAMN12621102 # BioProject: PRJNA561949 # Submitter: Vertebrate Genomes Project # Date: 2021-11-04 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAJGPY01 # Assembly method: hifiasm v. 0.12-r304; purge_dups v. 1.2.5; bionano_solve v. Solve3.6.1_11162020; salsa2 v. v2.2; gEVAL manual curation v. 2021-07-16 # Expected final version: no # Genome coverage: 20.81x # Sequencing technology: Pacbio Sequel II CCS; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics v1 Hi-C # RefSeq category: Reference Genome # GenBank assembly accession: GCA_020740605.1 # Linked assembly: GCA_020740595.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_020740655.1 Primary Assembly ## GCA_020740665.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM036472.1 <> na Primary Assembly 286674946 na SUPER_2 assembled-molecule 2 Chromosome CM036473.1 <> na Primary Assembly 147489633 na SUPER_3 assembled-molecule 3 Chromosome CM036474.1 <> na Primary Assembly 126926352 na SUPER_4 assembled-molecule 4 Chromosome CM036475.1 <> na Primary Assembly 117448925 na SUPER_5 assembled-molecule 5 Chromosome CM036476.1 <> na Primary Assembly 114043961 na SUPER_6 assembled-molecule 6 Chromosome CM036477.1 <> na Primary Assembly 109667037 na SUPER_7 assembled-molecule 7 Chromosome CM036478.1 <> na Primary Assembly 108754000 na SUPER_8 assembled-molecule 8 Chromosome CM036479.1 <> na Primary Assembly 103682405 na SUPER_9 assembled-molecule 9 Chromosome CM036480.1 <> na Primary Assembly 102162704 na SUPER_10 assembled-molecule 10 Chromosome CM036481.1 <> na Primary Assembly 93510380 na SUPER_11 assembled-molecule 11 Chromosome CM036482.1 <> na Primary Assembly 99922226 na SUPER_12 assembled-molecule 12 Chromosome CM036483.1 <> na Primary Assembly 99277061 na SUPER_13 assembled-molecule 13 Chromosome CM036484.1 <> na Primary Assembly 84040924 na SUPER_14 assembled-molecule 14 Chromosome CM036485.1 <> na Primary Assembly 70886106 na SUPER_15 assembled-molecule 15 Chromosome CM036486.1 <> na Primary Assembly 57765672 na SUPER_16 assembled-molecule 16 Chromosome CM036487.1 <> na Primary Assembly 56653852 na SUPER_17 assembled-molecule 17 Chromosome CM036488.1 <> na Primary Assembly 51633263 na SUPER_18 assembled-molecule 18 Chromosome CM036489.1 <> na Primary Assembly 49360328 na SUPER_19 assembled-molecule 19 Chromosome CM036490.1 <> na Primary Assembly 37494493 na SUPER_20 assembled-molecule 20 Chromosome CM036491.1 <> na Primary Assembly 34904378 na SUPER_21 assembled-molecule 21 Chromosome CM036492.1 <> na Primary Assembly 34588564 na SUPER_22 assembled-molecule 22 Chromosome CM036493.1 <> na Primary Assembly 31472186 na SUPER_23 assembled-molecule 23 Chromosome CM036494.1 <> na Primary Assembly 30841577 na SUPER_24 assembled-molecule 24 Chromosome CM036495.1 <> na Primary Assembly 16987551 na SUPER_25 assembled-molecule 25 Chromosome CM036496.1 <> na Primary Assembly 14521788 na SUPER_26 assembled-molecule 26 Chromosome CM036497.1 <> na Primary Assembly 9714578 na SUPER_27 assembled-molecule 27 Chromosome CM036498.1 <> na Primary Assembly 1917249 na SUPER_X assembled-molecule X Chromosome CM036499.1 <> na Primary Assembly 73531725 na SUPER_Y assembled-molecule Y Chromosome CM036500.1 <> na Primary Assembly 6804709 na SUPER_10_unloc_2 unlocalized-scaffold 10 Chromosome JAJGPY010000019.1 <> na Primary Assembly 1574362 na SUPER_10_unloc_3 unlocalized-scaffold 10 Chromosome JAJGPY010000020.1 <> na Primary Assembly 1534778 na SUPER_10_unloc_1 unlocalized-scaffold 10 Chromosome JAJGPY010000021.1 <> na Primary Assembly 1621058 na SUPER_10_unloc_4 unlocalized-scaffold 10 Chromosome JAJGPY010000022.1 <> na Primary Assembly 1003044 na SUPER_10_unloc_5 unlocalized-scaffold 10 Chromosome JAJGPY010000023.1 <> na Primary Assembly 917673 na SUPER_10_unloc_7 unlocalized-scaffold 10 Chromosome JAJGPY010000024.1 <> na Primary Assembly 495382 na SUPER_10_unloc_8 unlocalized-scaffold 10 Chromosome JAJGPY010000025.1 <> na Primary Assembly 455977 na SUPER_10_unloc_9 unlocalized-scaffold 10 Chromosome JAJGPY010000026.1 <> na Primary Assembly 408758 na SUPER_10_unloc_6 unlocalized-scaffold 10 Chromosome JAJGPY010000027.1 <> na Primary Assembly 591267 na SUPER_20_unloc_1 unlocalized-scaffold 20 Chromosome JAJGPY010000032.1 <> na Primary Assembly 246298 na U1 unplaced-scaffold na na JAJGPY010000040.1 <> na Primary Assembly 3105120 na scaffold_39_ctg1 unplaced-scaffold na na JAJGPY010000041.1 <> na Primary Assembly 3168015 na scaffold_41_ctg1 unplaced-scaffold na na JAJGPY010000042.1 <> na Primary Assembly 2759590 na scaffold_43_ctg1 unplaced-scaffold na na JAJGPY010000043.1 <> na Primary Assembly 2605031 na scaffold_44_ctg1 unplaced-scaffold na na JAJGPY010000044.1 <> na Primary Assembly 2380403 na scaffold_45_ctg1 unplaced-scaffold na na JAJGPY010000045.1 <> na Primary Assembly 2256868 na scaffold_46_ctg1 unplaced-scaffold na na JAJGPY010000046.1 <> na Primary Assembly 2244165 na scaffold_47_ctg1 unplaced-scaffold na na JAJGPY010000047.1 <> na Primary Assembly 2131560 na scaffold_48_ctg1 unplaced-scaffold na na JAJGPY010000048.1 <> na Primary Assembly 2067697 na scaffold_50_ctg1 unplaced-scaffold na na JAJGPY010000049.1 <> na Primary Assembly 1968298 na scaffold_51_ctg1 unplaced-scaffold na na JAJGPY010000050.1 <> na Primary Assembly 1917182 na scaffold_53_ctg1 unplaced-scaffold na na JAJGPY010000051.1 <> na Primary Assembly 1821073 na scaffold_54_ctg1 unplaced-scaffold na na JAJGPY010000052.1 <> na Primary Assembly 1640810 na scaffold_55_ctg1 unplaced-scaffold na na JAJGPY010000053.1 <> na Primary Assembly 1630978 na scaffold_58_ctg1 unplaced-scaffold na na JAJGPY010000054.1 <> na Primary Assembly 1574568 na scaffold_62_ctg1 unplaced-scaffold na na JAJGPY010000055.1 <> na Primary Assembly 1411040 na scaffold_63_ctg1 unplaced-scaffold na na JAJGPY010000056.1 <> na Primary Assembly 1386239 na scaffold_65_ctg1 unplaced-scaffold na na JAJGPY010000057.1 <> na Primary Assembly 1277486 na scaffold_66_ctg1 unplaced-scaffold na na JAJGPY010000058.1 <> na Primary Assembly 1240353 na scaffold_67_ctg1 unplaced-scaffold na na JAJGPY010000059.1 <> na Primary Assembly 1129245 na scaffold_68_ctg1 unplaced-scaffold na na JAJGPY010000060.1 <> na Primary Assembly 1120364 na scaffold_69_ctg1 unplaced-scaffold na na JAJGPY010000061.1 <> na Primary Assembly 1116074 na scaffold_70_ctg1 unplaced-scaffold na na JAJGPY010000062.1 <> na Primary Assembly 1070991 na scaffold_74_ctg1 unplaced-scaffold na na JAJGPY010000063.1 <> na Primary Assembly 994389 na scaffold_77_ctg1 unplaced-scaffold na na JAJGPY010000064.1 <> na Primary Assembly 894431 na scaffold_79_ctg1 unplaced-scaffold na na JAJGPY010000065.1 <> na Primary Assembly 836857 na scaffold_80_ctg1 unplaced-scaffold na na JAJGPY010000066.1 <> na Primary Assembly 818616 na scaffold_81_ctg1 unplaced-scaffold na na JAJGPY010000067.1 <> na Primary Assembly 776963 na scaffold_82_ctg1 unplaced-scaffold na na JAJGPY010000068.1 <> na Primary Assembly 767544 na scaffold_83_ctg1 unplaced-scaffold na na JAJGPY010000069.1 <> na Primary Assembly 765965 na scaffold_85_ctg1 unplaced-scaffold na na JAJGPY010000070.1 <> na Primary Assembly 757468 na scaffold_86_ctg1 unplaced-scaffold na na JAJGPY010000071.1 <> na Primary Assembly 756840 na scaffold_87_ctg1 unplaced-scaffold na na JAJGPY010000072.1 <> na Primary Assembly 725271 na scaffold_88_ctg1 unplaced-scaffold na na JAJGPY010000073.1 <> na Primary Assembly 710374 na scaffold_89_ctg1 unplaced-scaffold na na JAJGPY010000074.1 <> na Primary Assembly 670396 na scaffold_90_ctg1 unplaced-scaffold na na JAJGPY010000075.1 <> na Primary Assembly 610262 na scaffold_91_ctg1 unplaced-scaffold na na JAJGPY010000076.1 <> na Primary Assembly 603776 na scaffold_93_ctg1 unplaced-scaffold na na JAJGPY010000077.1 <> na Primary Assembly 545005 na scaffold_96_ctg1 unplaced-scaffold na na JAJGPY010000078.1 <> na Primary Assembly 486922 na scaffold_99_ctg1 unplaced-scaffold na na JAJGPY010000079.1 <> na Primary Assembly 429284 na scaffold_100_ctg1 unplaced-scaffold na na JAJGPY010000080.1 <> na Primary Assembly 422877 na scaffold_103_ctg1 unplaced-scaffold na na JAJGPY010000081.1 <> na Primary Assembly 390836 na scaffold_104_ctg1 unplaced-scaffold na na JAJGPY010000082.1 <> na Primary Assembly 387644 na scaffold_106_ctg1 unplaced-scaffold na na JAJGPY010000083.1 <> na Primary Assembly 337708 na scaffold_107_ctg1 unplaced-scaffold na na JAJGPY010000084.1 <> na Primary Assembly 336135 na scaffold_108_ctg1 unplaced-scaffold na na JAJGPY010000085.1 <> na Primary Assembly 333309 na scaffold_110_ctg1 unplaced-scaffold na na JAJGPY010000086.1 <> na Primary Assembly 325216 na scaffold_111_ctg1 unplaced-scaffold na na JAJGPY010000087.1 <> na Primary Assembly 319903 na scaffold_112_ctg1 unplaced-scaffold na na JAJGPY010000088.1 <> na Primary Assembly 311754 na scaffold_119_ctg1 unplaced-scaffold na na JAJGPY010000089.1 <> na Primary Assembly 231793 na scaffold_120_ctg1 unplaced-scaffold na na JAJGPY010000090.1 <> na Primary Assembly 224528 na scaffold_121_ctg1 unplaced-scaffold na na JAJGPY010000091.1 <> na Primary Assembly 214187 na scaffold_125_ctg1 unplaced-scaffold na na JAJGPY010000092.1 <> na Primary Assembly 198428 na scaffold_126_ctg1 unplaced-scaffold na na JAJGPY010000093.1 <> na Primary Assembly 192828 na scaffold_128_ctg1 unplaced-scaffold na na JAJGPY010000094.1 <> na Primary Assembly 179609 na scaffold_132_ctg1 unplaced-scaffold na na JAJGPY010000095.1 <> na Primary Assembly 157648 na scaffold_133_ctg1 unplaced-scaffold na na JAJGPY010000096.1 <> na Primary Assembly 155492 na scaffold_134_ctg1 unplaced-scaffold na na JAJGPY010000097.1 <> na Primary Assembly 149516 na scaffold_135_ctg1 unplaced-scaffold na na JAJGPY010000098.1 <> na Primary Assembly 137483 na scaffold_136_ctg1 unplaced-scaffold na na JAJGPY010000099.1 <> na Primary Assembly 134637 na scaffold_137_ctg1 unplaced-scaffold na na JAJGPY010000100.1 <> na Primary Assembly 133874 na scaffold_138_ctg1 unplaced-scaffold na na JAJGPY010000101.1 <> na Primary Assembly 132460 na scaffold_140_ctg1 unplaced-scaffold na na JAJGPY010000102.1 <> na Primary Assembly 118969 na scaffold_142_ctg1 unplaced-scaffold na na JAJGPY010000103.1 <> na Primary Assembly 108676 na scaffold_143_ctg1 unplaced-scaffold na na JAJGPY010000104.1 <> na Primary Assembly 99556 na scaffold_144_ctg1 unplaced-scaffold na na JAJGPY010000105.1 <> na Primary Assembly 98709 na scaffold_145_ctg1 unplaced-scaffold na na JAJGPY010000106.1 <> na Primary Assembly 98558 na scaffold_147_ctg1 unplaced-scaffold na na JAJGPY010000107.1 <> na Primary Assembly 79677 na scaffold_148_ctg1 unplaced-scaffold na na JAJGPY010000108.1 <> na Primary Assembly 71225 na scaffold_149_ctg1 unplaced-scaffold na na JAJGPY010000109.1 <> na Primary Assembly 70158 na scaffold_150_ctg1 unplaced-scaffold na na JAJGPY010000110.1 <> na Primary Assembly 66798 na scaffold_151_ctg1 unplaced-scaffold na na JAJGPY010000111.1 <> na Primary Assembly 65115 na scaffold_152_ctg1 unplaced-scaffold na na JAJGPY010000112.1 <> na Primary Assembly 61595 na scaffold_154_ctg1 unplaced-scaffold na na JAJGPY010000113.1 <> na Primary Assembly 60937 na scaffold_155_ctg1 unplaced-scaffold na na JAJGPY010000114.1 <> na Primary Assembly 58913 na scaffold_156_ctg1 unplaced-scaffold na na JAJGPY010000115.1 <> na Primary Assembly 56805 na scaffold_158_ctg1 unplaced-scaffold na na JAJGPY010000116.1 <> na Primary Assembly 56318 na scaffold_160_ctg1 unplaced-scaffold na na JAJGPY010000117.1 <> na Primary Assembly 54901 na scaffold_162_ctg1 unplaced-scaffold na na JAJGPY010000118.1 <> na Primary Assembly 53351 na scaffold_163_ctg1 unplaced-scaffold na na JAJGPY010000119.1 <> na Primary Assembly 53116 na scaffold_164_ctg1 unplaced-scaffold na na JAJGPY010000120.1 <> na Primary Assembly 52237 na scaffold_166_ctg1 unplaced-scaffold na na JAJGPY010000121.1 <> na Primary Assembly 51176 na scaffold_167_ctg1 unplaced-scaffold na na JAJGPY010000122.1 <> na Primary Assembly 50789 na scaffold_169_ctg1 unplaced-scaffold na na JAJGPY010000123.1 <> na Primary Assembly 49047 na scaffold_172_ctg1 unplaced-scaffold na na JAJGPY010000124.1 <> na Primary Assembly 45486 na scaffold_174_ctg1 unplaced-scaffold na na JAJGPY010000125.1 <> na Primary Assembly 43333 na scaffold_175_ctg1 unplaced-scaffold na na JAJGPY010000126.1 <> na Primary Assembly 42366 na scaffold_177_ctg1 unplaced-scaffold na na JAJGPY010000127.1 <> na Primary Assembly 40752 na scaffold_179_ctg1 unplaced-scaffold na na JAJGPY010000128.1 <> na Primary Assembly 39067 na scaffold_183_ctg1 unplaced-scaffold na na JAJGPY010000129.1 <> na Primary Assembly 38224 na scaffold_184_ctg1 unplaced-scaffold na na JAJGPY010000130.1 <> na Primary Assembly 37919 na scaffold_186_ctg1 unplaced-scaffold na na JAJGPY010000131.1 <> na Primary Assembly 37631 na scaffold_188_ctg1 unplaced-scaffold na na JAJGPY010000132.1 <> na Primary Assembly 37589 na scaffold_190_ctg1 unplaced-scaffold na na JAJGPY010000133.1 <> na Primary Assembly 36631 na scaffold_192_ctg1 unplaced-scaffold na na JAJGPY010000134.1 <> na Primary Assembly 36455 na scaffold_196_ctg1 unplaced-scaffold na na JAJGPY010000135.1 <> na Primary Assembly 34191 na scaffold_198_ctg1 unplaced-scaffold na na JAJGPY010000136.1 <> na Primary Assembly 33163 na scaffold_200_ctg1 unplaced-scaffold na na JAJGPY010000137.1 <> na Primary Assembly 32379 na scaffold_202_ctg1 unplaced-scaffold na na JAJGPY010000138.1 <> na Primary Assembly 31521 na scaffold_205_ctg1 unplaced-scaffold na na JAJGPY010000139.1 <> na Primary Assembly 30394 na scaffold_207_ctg1 unplaced-scaffold na na JAJGPY010000140.1 <> na Primary Assembly 28848 na scaffold_209_ctg1 unplaced-scaffold na na JAJGPY010000141.1 <> na Primary Assembly 28353 na scaffold_212_ctg1 unplaced-scaffold na na JAJGPY010000142.1 <> na Primary Assembly 27435 na scaffold_215_ctg1 unplaced-scaffold na na JAJGPY010000143.1 <> na Primary Assembly 26130 na scaffold_217_ctg1 unplaced-scaffold na na JAJGPY010000144.1 <> na Primary Assembly 25485 na scaffold_220_ctg1 unplaced-scaffold na na JAJGPY010000145.1 <> na Primary Assembly 24763 na scaffold_223_ctg1 unplaced-scaffold na na JAJGPY010000146.1 <> na Primary Assembly 22138 na scaffold_226_ctg1 unplaced-scaffold na na JAJGPY010000147.1 <> na Primary Assembly 19059 na scaffold_232_ctg1 unplaced-scaffold na na JAJGPY010000148.1 <> na Primary Assembly 4724 na scaffold_157_ctg1 unplaced-scaffold na na JAJGPY010000149.1 <> na Primary Assembly 56429 na scaffold_165_ctg1 unplaced-scaffold na na JAJGPY010000150.1 <> na Primary Assembly 51266 na scaffold_170_ctg1 unplaced-scaffold na na JAJGPY010000151.1 <> na Primary Assembly 48352 na scaffold_173_ctg1 unplaced-scaffold na na JAJGPY010000152.1 <> na Primary Assembly 45110 na scaffold_176_ctg1 unplaced-scaffold na na JAJGPY010000153.1 <> na Primary Assembly 42088 na scaffold_178_ctg1 unplaced-scaffold na na JAJGPY010000154.1 <> na Primary Assembly 39565 na scaffold_180_ctg1 unplaced-scaffold na na JAJGPY010000155.1 <> na Primary Assembly 38749 na scaffold_182_ctg1 unplaced-scaffold na na JAJGPY010000156.1 <> na Primary Assembly 38259 na scaffold_185_ctg1 unplaced-scaffold na na JAJGPY010000157.1 <> na Primary Assembly 37766 na scaffold_187_ctg1 unplaced-scaffold na na JAJGPY010000158.1 <> na Primary Assembly 37615 na scaffold_189_ctg1 unplaced-scaffold na na JAJGPY010000159.1 <> na Primary Assembly 37240 na scaffold_191_ctg1 unplaced-scaffold na na JAJGPY010000160.1 <> na Primary Assembly 36492 na scaffold_193_ctg1 unplaced-scaffold na na JAJGPY010000161.1 <> na Primary Assembly 36363 na scaffold_195_ctg1 unplaced-scaffold na na JAJGPY010000162.1 <> na Primary Assembly 35356 na scaffold_197_ctg1 unplaced-scaffold na na JAJGPY010000163.1 <> na Primary Assembly 34170 na scaffold_199_ctg1 unplaced-scaffold na na JAJGPY010000164.1 <> na Primary Assembly 32445 na scaffold_201_ctg1 unplaced-scaffold na na JAJGPY010000165.1 <> na Primary Assembly 31803 na scaffold_203_ctg1 unplaced-scaffold na na JAJGPY010000166.1 <> na Primary Assembly 30513 na scaffold_204_ctg1 unplaced-scaffold na na JAJGPY010000167.1 <> na Primary Assembly 30408 na scaffold_206_ctg1 unplaced-scaffold na na JAJGPY010000168.1 <> na Primary Assembly 29223 na scaffold_208_ctg1 unplaced-scaffold na na JAJGPY010000169.1 <> na Primary Assembly 28714 na scaffold_210_ctg1 unplaced-scaffold na na JAJGPY010000170.1 <> na Primary Assembly 27612 na scaffold_211_ctg1 unplaced-scaffold na na JAJGPY010000171.1 <> na Primary Assembly 27487 na scaffold_213_ctg1 unplaced-scaffold na na JAJGPY010000172.1 <> na Primary Assembly 27089 na scaffold_214_ctg1 unplaced-scaffold na na JAJGPY010000173.1 <> na Primary Assembly 26747 na scaffold_216_ctg1 unplaced-scaffold na na JAJGPY010000174.1 <> na Primary Assembly 25969 na scaffold_218_ctg1 unplaced-scaffold na na JAJGPY010000175.1 <> na Primary Assembly 24994 na scaffold_219_ctg1 unplaced-scaffold na na JAJGPY010000176.1 <> na Primary Assembly 24841 na scaffold_221_ctg1 unplaced-scaffold na na JAJGPY010000177.1 <> na Primary Assembly 23465 na scaffold_222_ctg1 unplaced-scaffold na na JAJGPY010000178.1 <> na Primary Assembly 22628 na scaffold_224_ctg1 unplaced-scaffold na na JAJGPY010000179.1 <> na Primary Assembly 22056 na scaffold_225_ctg1 unplaced-scaffold na na JAJGPY010000180.1 <> na Primary Assembly 21405 na scaffold_227_ctg1 unplaced-scaffold na na JAJGPY010000181.1 <> na Primary Assembly 18597 na scaffold_228_ctg1 unplaced-scaffold na na JAJGPY010000182.1 <> na Primary Assembly 18533 na scaffold_230_ctg1 unplaced-scaffold na na JAJGPY010000183.1 <> na Primary Assembly 16179 na scaffold_231_ctg1 unplaced-scaffold na na JAJGPY010000184.1 <> na Primary Assembly 9725 na mLemCat1_MT assembled-molecule MT Mitochondrion CM036502.1 <> na non-nuclear 17086 na