RepeatModeler Version 2.0.4
===========================
Using output directory = /dev/shm/rModeler.3XdVXE/RM_11481.ThuSep121247062024
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1726170426
Database = /dev/shm/rModeler.3XdVXE/GCA_019844115.2_ASM1984411v2   - Sequences = 8
  - Bases = 9197619
Storage Throughput = good ( 987.17 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 9197489 bp ( 9197489 non ambiguous )
   - Num Contigs Represented = 8
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:05:50 (hh:mm:ss) Elapsed Time
Round Time: 00:06:41 (hh:mm:ss) Elapsed Time : 1 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:29 (hh:mm:ss) Elapsed Time
 -- Masking repeats from the previous rounds...
       15 repeats masked totaling 14687 bp(s).
   - TE Masking time 00:00:04 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 9197489 bp
       Num Contigs Represented = 8
       Non ambiguous bp:
             Initial: 9197489 bp
             After Masking: 9085682 bp
             Masked: 1.22 % 
 -- Input Database Coverage: 9197489 bp out of 9197619 bp ( 100.00 % )
Sampling Time: 00:00:35 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 27028
Comparison Time: 00:09:28 (hh:mm:ss) Elapsed Time, 1086 HSPs Collected
Number of families returned by RECON: 320
Round Time: 00:10:05 (hh:mm:ss) Elapsed Time : 0 families discovered.

RepeatScout/RECON discovery complete: 1 families found


Classification Time: 00:00:19 (hh:mm:ss) Elapsed Time


Program Time: 00:17:05 (hh:mm:ss) Elapsed Time