# Assembly name: HG03540_mat_hprc_f2 # Organism name: Homo sapiens (human) # Isolate: HG03540 # Sex: female # Taxid: 9606 # BioSample: SAMN17861670 # BioProject: PRJNA726182 # Submitter: UCSC Genomics Institute # Date: 2024-09-20 # Assembly type: haploid (maternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAGYVX02 # Assembly method: Hifiasm v. 0.19.7 # Expected final version: no # Genome coverage: 59x # Sequencing technology: PacBio; Oxford Nanopore # GenBank assembly accession: GCA_018473295.2 # Linked assembly: GCA_018473315.2 (paternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_018473325.2 Primary Assembly ## GCA_018473355.2 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name HG03540#2#h2tg000004l assembled-molecule 2 Chromosome CM088060.1 <> na Primary Assembly 241946673 na HG03540#2#h2tg000002l assembled-molecule 4 Chromosome CM088061.1 <> na Primary Assembly 189970508 na HG03540#2#h2tg000012l assembled-molecule 5 Chromosome CM088062.1 <> na Primary Assembly 182543411 na HG03540#2#h2tg000014l assembled-molecule 6 Chromosome CM088063.1 <> na Primary Assembly 172443175 na HG03540#2#h2tg000009l assembled-molecule 7 Chromosome CM088064.1 <> na Primary Assembly 160813967 na HG03540#2#h2tg000018l assembled-molecule 8 Chromosome CM088065.1 <> na Primary Assembly 146318378 na HG03540#2#h2tg000007l assembled-molecule 9 Chromosome CM088066.1 <> na Primary Assembly 144287071 na HG03540#2#h2tg000016l assembled-molecule 11 Chromosome CM088067.1 <> na Primary Assembly 134438303 na HG03540#2#h2tg000001l assembled-molecule 12 Chromosome CM088068.1 <> na Primary Assembly 133097516 na HG03540#2#h2tg000008l assembled-molecule 16 Chromosome CM088069.1 <> na Primary Assembly 91063046 na HG03540#2#h2tg000025l assembled-molecule 17 Chromosome CM088070.1 <> na Primary Assembly 83793312 na HG03540#2#h2tg000020l assembled-molecule 18 Chromosome CM088071.1 <> na Primary Assembly 79427898 na HG03540#2#h2tg000010l assembled-molecule 19 Chromosome CM088072.1 <> na Primary Assembly 60753646 na HG03540#2#h2tg000005l unplaced-scaffold na na JAGYVX020000002.1 <> na Primary Assembly 109942525 na HG03540#2#h2tg000006l unplaced-scaffold na na JAGYVX020000003.1 <> na Primary Assembly 92649697 na HG03540#2#h2tg000011l unplaced-scaffold na na JAGYVX020000005.1 <> na Primary Assembly 97346250 na HG03540#2#h2tg000015l unplaced-scaffold na na JAGYVX020000007.1 <> na Primary Assembly 133807500 na HG03540#2#h2tg000021l unplaced-scaffold na na JAGYVX020000010.1 <> na Primary Assembly 136921235 na HG03540#2#h2tg000023l unplaced-scaffold na na JAGYVX020000011.1 <> na Primary Assembly 4311830 na HG03540#2#h2tg000024l unplaced-scaffold na na JAGYVX020000012.1 <> na Primary Assembly 33997806 na HG03540#2#h2tg000026l unplaced-scaffold na na JAGYVX020000013.1 <> na Primary Assembly 1852284 na HG03540#2#h2tg000027l unplaced-scaffold na na JAGYVX020000014.1 <> na Primary Assembly 52243303 na HG03540#2#h2tg000028l unplaced-scaffold na na JAGYVX020000015.1 <> na Primary Assembly 265578 na HG03540#2#h2tg000030l unplaced-scaffold na na JAGYVX020000016.1 <> na Primary Assembly 43784936 na HG03540#2#h2tg000031l unplaced-scaffold na na JAGYVX020000017.1 <> na Primary Assembly 777852 na HG03540#2#h2tg000038l unplaced-scaffold na na JAGYVX020000018.1 <> na Primary Assembly 2019283 na HG03540#2#h2tg000039l unplaced-scaffold na na JAGYVX020000019.1 <> na Primary Assembly 307657 na HG03540#2#h2tg000040l unplaced-scaffold na na JAGYVX020000020.1 <> na Primary Assembly 787215 na HG03540#2#h2tg000043l unplaced-scaffold na na JAGYVX020000021.1 <> na Primary Assembly 419185 na HG03540#2#h2tg000044l unplaced-scaffold na na JAGYVX020000022.1 <> na Primary Assembly 1839375 na HG03540#2#h2tg000049l unplaced-scaffold na na JAGYVX020000023.1 <> na Primary Assembly 336789 na HG03540#2#h2tg000050l unplaced-scaffold na na JAGYVX020000024.1 <> na Primary Assembly 357399 na HG03540#2#h2tg000051l unplaced-scaffold na na JAGYVX020000025.1 <> na Primary Assembly 882988 na HG03540#2#h2tg000053l unplaced-scaffold na na JAGYVX020000026.1 <> na Primary Assembly 2112026 na HG03540#2#h2tg000054l unplaced-scaffold na na JAGYVX020000027.1 <> na Primary Assembly 75794 na HG03540#2#h2tg000056l unplaced-scaffold na na JAGYVX020000028.1 <> na Primary Assembly 753388 na HG03540#2#h2tg000058l unplaced-scaffold na na JAGYVX020000029.1 <> na Primary Assembly 408840 na HG03540#2#h2tg000059l unplaced-scaffold na na JAGYVX020000030.1 <> na Primary Assembly 71962 na HG03540#2#h2tg000061l unplaced-scaffold na na JAGYVX020000031.1 <> na Primary Assembly 850219 na HG03540#2#h2tg000063l unplaced-scaffold na na JAGYVX020000032.1 <> na Primary Assembly 313541 na HG03540#2#h2tg000066l unplaced-scaffold na na JAGYVX020000033.1 <> na Primary Assembly 490172 na HG03540#2#h2tg000067l unplaced-scaffold na na JAGYVX020000034.1 <> na Primary Assembly 64712 na HG03540#2#h2tg000068l unplaced-scaffold na na JAGYVX020000035.1 <> na Primary Assembly 227663 na HG03540#2#h2tg000070l unplaced-scaffold na na JAGYVX020000036.1 <> na Primary Assembly 177333 na HG03540#2#h2tg000071l unplaced-scaffold na na JAGYVX020000037.1 <> na Primary Assembly 60951 na HG03540#2#h2tg000072l unplaced-scaffold na na JAGYVX020000038.1 <> na Primary Assembly 132962 na HG03540#2#h2tg000074l unplaced-scaffold na na JAGYVX020000039.1 <> na Primary Assembly 140071 na HG03540#2#h2tg000075l unplaced-scaffold na na JAGYVX020000040.1 <> na Primary Assembly 199868 na HG03540#2#h2tg000078l unplaced-scaffold na na JAGYVX020000041.1 <> na Primary Assembly 76158 na HG03540#2#h2tg000083l unplaced-scaffold na na JAGYVX020000042.1 <> na Primary Assembly 90433 na HG03540#2#h2tg000085l unplaced-scaffold na na JAGYVX020000043.1 <> na Primary Assembly 63776 na HG03540#2#h2tg000087l unplaced-scaffold na na JAGYVX020000044.1 <> na Primary Assembly 54726 na HG03540#2#h2tg000088l unplaced-scaffold na na JAGYVX020000045.1 <> na Primary Assembly 109635 na HG03540#2#h2tg000089l unplaced-scaffold na na JAGYVX020000046.1 <> na Primary Assembly 95660 na HG03540#2#h2tg000090l unplaced-scaffold na na JAGYVX020000047.1 <> na Primary Assembly 107390 na HG03540#2#h2tg000094l unplaced-scaffold na na JAGYVX020000048.1 <> na Primary Assembly 193463 na HG03540#2#h2tg000101l unplaced-scaffold na na JAGYVX020000049.1 <> na Primary Assembly 84341 na HG03540#2#h2tg000106l unplaced-scaffold na na JAGYVX020000050.1 <> na Primary Assembly 66446 na HG03540#2#h2tg000109l unplaced-scaffold na na JAGYVX020000051.1 <> na Primary Assembly 58662 na HG03540#2#h2tg000110l unplaced-scaffold na na JAGYVX020000052.1 <> na Primary Assembly 60025 na HG03540#2#h2tg000122l unplaced-scaffold na na JAGYVX020000053.1 <> na Primary Assembly 112079 na HG03540#2#h2tg000003l unplaced-scaffold na na JAGYVX020000055.1 <> na Primary Assembly 105876301 na HG03540#2#h2tg000013l unplaced-scaffold na na JAGYVX020000060.1 <> na Primary Assembly 102389682 na HG03540#2#h2tg000017l unplaced-scaffold na na JAGYVX020000062.1 <> na Primary Assembly 32179003 na HG03540#2#h2tg000019l unplaced-scaffold na na JAGYVX020000063.1 <> na Primary Assembly 97762354 na HG03540#2#h2tg000022l unplaced-scaffold na na JAGYVX020000065.1 <> na Primary Assembly 36226245 na HG03540#2#h2tg000029l unplaced-scaffold na na JAGYVX020000067.1 <> na Primary Assembly 93256664 na HG03540#2#h2tg000032l unplaced-scaffold na na JAGYVX020000068.1 <> na Primary Assembly 3677072 na HG03540#2#h2tg000033l unplaced-scaffold na na JAGYVX020000069.1 <> na Primary Assembly 232018 na HG03540#2#h2tg000034l unplaced-scaffold na na JAGYVX020000070.1 <> na Primary Assembly 5148069 na HG03540#2#h2tg000035l unplaced-scaffold na na JAGYVX020000071.1 <> na Primary Assembly 3397888 na HG03540#2#h2tg000036l unplaced-scaffold na na JAGYVX020000072.1 <> na Primary Assembly 4073622 na HG03540#2#h2tg000037l unplaced-scaffold na na JAGYVX020000073.1 <> na Primary Assembly 9121595 na HG03540#2#h2tg000041l unplaced-scaffold na na JAGYVX020000074.1 <> na Primary Assembly 1534282 na HG03540#2#h2tg000045l unplaced-scaffold na na JAGYVX020000075.1 <> na Primary Assembly 215477 na HG03540#2#h2tg000046l unplaced-scaffold na na JAGYVX020000076.1 <> na Primary Assembly 1260204 na HG03540#2#h2tg000047l unplaced-scaffold na na JAGYVX020000077.1 <> na Primary Assembly 78814 na HG03540#2#h2tg000048l unplaced-scaffold na na JAGYVX020000078.1 <> na Primary Assembly 1590033 na HG03540#2#h2tg000052l unplaced-scaffold na na JAGYVX020000079.1 <> na Primary Assembly 204506 na HG03540#2#h2tg000055l unplaced-scaffold na na JAGYVX020000080.1 <> na Primary Assembly 178669 na HG03540#2#h2tg000060l unplaced-scaffold na na JAGYVX020000081.1 <> na Primary Assembly 1778070 na HG03540#2#h2tg000062l unplaced-scaffold na na JAGYVX020000082.1 <> na Primary Assembly 247680 na HG03540#2#h2tg000064l unplaced-scaffold na na JAGYVX020000083.1 <> na Primary Assembly 512682 na HG03540#2#h2tg000065l unplaced-scaffold na na JAGYVX020000084.1 <> na Primary Assembly 222805 na HG03540#2#h2tg000069l unplaced-scaffold na na JAGYVX020000085.1 <> na Primary Assembly 161269 na HG03540#2#h2tg000073l unplaced-scaffold na na JAGYVX020000086.1 <> na Primary Assembly 96359 na HG03540#2#h2tg000079l unplaced-scaffold na na JAGYVX020000087.1 <> na Primary Assembly 90217 na HG03540#2#h2tg000082l unplaced-scaffold na na JAGYVX020000088.1 <> na Primary Assembly 103634 na HG03540#2#h2tg000084l unplaced-scaffold na na JAGYVX020000089.1 <> na Primary Assembly 234308 na HG03540#2#h2tg000091l unplaced-scaffold na na JAGYVX020000090.1 <> na Primary Assembly 64185 na HG03540#2#h2tg000092l unplaced-scaffold na na JAGYVX020000091.1 <> na Primary Assembly 66500 na HG03540#2#h2tg000096l unplaced-scaffold na na JAGYVX020000092.1 <> na Primary Assembly 127429 na HG03540#2#h2tg000100l unplaced-scaffold na na JAGYVX020000093.1 <> na Primary Assembly 62605 na HG03540#2#h2tg000102l unplaced-scaffold na na JAGYVX020000094.1 <> na Primary Assembly 50149 na HG03540#2#h2tg000104l unplaced-scaffold na na JAGYVX020000095.1 <> na Primary Assembly 106939 na HG03540#2#h2tg000105l unplaced-scaffold na na JAGYVX020000096.1 <> na Primary Assembly 81000 na HG03540#2#h2tg000107l unplaced-scaffold na na JAGYVX020000097.1 <> na Primary Assembly 73720 na HG03540#2#h2tg000111l unplaced-scaffold na na JAGYVX020000098.1 <> na Primary Assembly 69357 na HG03540#2#h2tg000124l unplaced-scaffold na na JAGYVX020000099.1 <> na Primary Assembly 60871 na HG03540#2#atg000001l_rc_rotated unlocalized-scaffold MT Mitochondrion JAGYVX020000100.1 <> na non-nuclear 16569 na