RepeatModeler Version 2.0.4
===========================
Using output directory = /dev/shm/rModeler.7aYvL7/RM_18557.TueAug131219012024
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1723576740
Database = /dev/shm/rModeler.7aYvL7/GCA_018342045.1_Swiss_hellem_version_1   - Sequences = 32
  - Bases = 2255675
Storage Throughput = good ( 794.84 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 2255548 bp ( 2255548 non ambiguous )
   - Num Contigs Represented = 32
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:01:15 (hh:mm:ss) Elapsed Time
Round Time: 00:01:23 (hh:mm:ss) Elapsed Time : 4 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:00 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:03 (hh:mm:ss) Elapsed Time
 -- Masking repeats from the previous rounds...
       72 repeats masked totaling 10567 bp(s).
   - TE Masking time 00:00:01 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 2255548 bp
       Num Contigs Represented = 32
       Non ambiguous bp:
             Initial: 2255548 bp
             After Masking: 2243654 bp
             Masked: 0.53 % 
 -- Input Database Coverage: 2255548 bp out of 2255675 bp ( 99.99 % )
Sampling Time: 00:00:05 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 3081
Comparison Time: 00:00:48 (hh:mm:ss) Elapsed Time, 508 HSPs Collected
Number of families returned by RECON: 161
Round Time: 00:00:54 (hh:mm:ss) Elapsed Time : 0 families discovered.

RepeatScout/RECON discovery complete: 4 families found


Classification Time: 00:00:03 (hh:mm:ss) Elapsed Time


Program Time: 00:02:20 (hh:mm:ss) Elapsed Time