RepeatModeler Version 2.0.4
===========================
Using output directory = /dev/shm/rModeler.mcKB0I/RM_6778.TueAug131214462024
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1723576485
Database = /dev/shm/rModeler.mcKB0I/GCA_018127085.1_P2C.v1.0   - Sequences = 19
  - Bases = 8274841
Storage Throughput = excellent ( 1046.47 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 8274773 bp ( 8274757 non ambiguous )
   - Num Contigs Represented = 19
   - Sequence extraction : 00:00:02 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:04:44 (hh:mm:ss) Elapsed Time
Round Time: 00:14:03 (hh:mm:ss) Elapsed Time : 18 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:35 (hh:mm:ss) Elapsed Time
 -- Masking repeats from the previous rounds...
       764 repeats masked totaling 634705 bp(s).
   - TE Masking time 00:00:07 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 8274773 bp
       Num Contigs Represented = 19
       Non ambiguous bp:
             Initial: 8274757 bp
             After Masking: 7616720 bp
             Masked: 7.95 % 
 -- Input Database Coverage: 8274773 bp out of 8274841 bp ( 100.00 % )
Sampling Time: 00:00:44 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 23653
Comparison Time: 00:17:01 (hh:mm:ss) Elapsed Time, 3923 HSPs Collected
Number of families returned by RECON: 268
Round Time: 00:17:46 (hh:mm:ss) Elapsed Time : 0 families discovered.

RepeatScout/RECON discovery complete: 18 families found


Classification Time: 00:02:08 (hh:mm:ss) Elapsed Time


Program Time: 00:33:57 (hh:mm:ss) Elapsed Time