# Assembly name: LU_Lori_1.0 # Organism name: Leishmania orientalis (kinetoplastids) # Isolate: LSCM4 # Taxid: 2249476 # BioSample: SAMN17294111 # BioProject: PRJNA691532 # Submitter: Lancaster University # Date: 2021-04-15 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAFHLR01 # Assembly method: Flye assembler v. 2.6; Samtools v. 1.9 # Expected final version: yes # Genome coverage: 390.7x # Sequencing technology: Oxford Nanopore MinION; Illumina HiSeq; Illumina MiSeq # RefSeq category: Reference Genome # GenBank assembly accession: GCA_017916335.1 # RefSeq assembly accession: GCF_017916335.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_017916435.1 GCF_017916435.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name CM4_Chr_01 assembled-molecule 1 Chromosome CM030432.1 = NC_090078.1 Primary Assembly 347095 na CM4_Chr_02 assembled-molecule 2 Chromosome CM030433.1 = NC_090079.1 Primary Assembly 463530 na CM4_Chr_03 assembled-molecule 3 Chromosome CM030434.1 = NC_090080.1 Primary Assembly 420292 na CM4_Chr_04 assembled-molecule 4 Chromosome CM030435.1 = NC_090081.1 Primary Assembly 514534 na CM4_Chr_05 assembled-molecule 5 Chromosome CM030436.1 = NC_090082.1 Primary Assembly 543186 na CM4_Chr_06 assembled-molecule 6 Chromosome CM030437.1 = NC_090083.1 Primary Assembly 544415 na CM4_Chr_07 assembled-molecule 7 Chromosome CM030438.1 = NC_090084.1 Primary Assembly 676446 na CM4_Chr_08 assembled-molecule 8 Chromosome CM030439.1 = NC_090085.1 Primary Assembly 518757 na CM4_Chr_09 assembled-molecule 9 Chromosome CM030440.1 = NC_090086.1 Primary Assembly 634590 na CM4_Chr_10 assembled-molecule 10 Chromosome CM030441.1 = NC_090087.1 Primary Assembly 613339 na CM4_Chr_11 assembled-molecule 11 Chromosome CM030442.1 = NC_090088.1 Primary Assembly 632716 na CM4_Chr_12 assembled-molecule 12 Chromosome CM030443.1 = NC_090089.1 Primary Assembly 548034 na CM4_Chr_13 assembled-molecule 13 Chromosome CM030444.1 = NC_090090.1 Primary Assembly 654224 na CM4_Chr_14 assembled-molecule 14 Chromosome CM030445.1 = NC_090091.1 Primary Assembly 676106 na CM4_Chr_15 assembled-molecule 15 Chromosome CM030446.1 = NC_090092.1 Primary Assembly 692707 na CM4_Chr_16 assembled-molecule 16 Chromosome CM030447.1 = NC_090093.1 Primary Assembly 728510 na CM4_Chr_17 assembled-molecule 17 Chromosome CM030448.1 = NC_090094.1 Primary Assembly 756537 na CM4_Chr_18 assembled-molecule 18 Chromosome CM030449.1 = NC_090095.1 Primary Assembly 716501 na CM4_Chr_19 assembled-molecule 19 Chromosome CM030450.1 = NC_090096.1 Primary Assembly 682718 na CM4_Chr_20 assembled-molecule 20 Chromosome CM030451.1 = NC_090097.1 Primary Assembly 788171 na CM4_Chr_21 assembled-molecule 21 Chromosome CM030452.1 = NC_090098.1 Primary Assembly 783645 na CM4_Chr_22 assembled-molecule 22 Chromosome CM030453.1 = NC_090099.1 Primary Assembly 736070 na CM4_Chr_23 assembled-molecule 23 Chromosome CM030454.1 = NC_090100.1 Primary Assembly 899656 na CM4_Chr_24 assembled-molecule 24 Chromosome CM030455.1 = NC_090101.1 Primary Assembly 871047 na CM4_Chr_25 assembled-molecule 25 Chromosome CM030456.1 = NC_090102.1 Primary Assembly 1008137 na CM4_Chr_26 assembled-molecule 26 Chromosome CM030457.1 = NC_090103.1 Primary Assembly 1126264 na CM4_Chr_27 assembled-molecule 27 Chromosome CM030458.1 = NC_090104.1 Primary Assembly 1120138 na CM4_Chr_28 assembled-molecule 28 Chromosome CM030459.1 = NC_090105.1 Primary Assembly 1241591 na CM4_Chr_29 assembled-molecule 29 Chromosome CM030460.1 = NC_090106.1 Primary Assembly 1175281 na CM4_Chr_30 assembled-molecule 30 Chromosome CM030461.1 = NC_090107.1 Primary Assembly 1374572 na CM4_Chr_31 assembled-molecule 31 Chromosome CM030462.1 = NC_090108.1 Primary Assembly 1632718 na CM4_Chr_32 assembled-molecule 32 Chromosome CM030463.1 = NC_090109.1 Primary Assembly 1596743 na CM4_Chr_33 assembled-molecule 33 Chromosome CM030464.1 = NC_090110.1 Primary Assembly 1604953 na CM4_Chr_34 assembled-molecule 34 Chromosome CM030465.1 = NC_090111.1 Primary Assembly 1798465 na CM4_Chr_35 assembled-molecule 35 Chromosome CM030466.1 = NC_090112.1 Primary Assembly 2079296 na CM4_Chr_36 assembled-molecule 36 Chromosome CM030467.1 = NC_090113.1 Primary Assembly 2735713 na contig_1 unplaced-scaffold na na JAFHLR010000037.1 = NW_027122725.1 Primary Assembly 1101 na contig_108 unplaced-scaffold na na JAFHLR010000038.1 = NW_027122726.1 Primary Assembly 2530 na contig_109 unplaced-scaffold na na JAFHLR010000039.1 = NW_027122727.1 Primary Assembly 493 na contig_111 unplaced-scaffold na na JAFHLR010000040.1 = NW_027122728.1 Primary Assembly 9213 na contig_112 unplaced-scaffold na na JAFHLR010000041.1 = NW_027122729.1 Primary Assembly 1567 na contig_113 unplaced-scaffold na na JAFHLR010000042.1 = NW_027122730.1 Primary Assembly 519 na contig_116 unplaced-scaffold na na JAFHLR010000043.1 = NW_027122731.1 Primary Assembly 557 na contig_118 unplaced-scaffold na na JAFHLR010000044.1 = NW_027122732.1 Primary Assembly 2321 na contig_122 unplaced-scaffold na na JAFHLR010000045.1 = NW_027122733.1 Primary Assembly 2580 na contig_127 unplaced-scaffold na na JAFHLR010000046.1 = NW_027122734.1 Primary Assembly 525 na contig_129 unplaced-scaffold na na JAFHLR010000047.1 = NW_027122735.1 Primary Assembly 1257 na contig_131 unplaced-scaffold na na JAFHLR010000048.1 = NW_027122736.1 Primary Assembly 3976 na contig_132 unplaced-scaffold na na JAFHLR010000049.1 = NW_027122737.1 Primary Assembly 843 na contig_136 unplaced-scaffold na na JAFHLR010000050.1 = NW_027122738.1 Primary Assembly 3334 na contig_155 unplaced-scaffold na na JAFHLR010000051.1 = NW_027122739.1 Primary Assembly 22802 na contig_159 unplaced-scaffold na na JAFHLR010000052.1 = NW_027122740.1 Primary Assembly 906 na contig_160 unplaced-scaffold na na JAFHLR010000053.1 = NW_027122741.1 Primary Assembly 1640 na contig_162 unplaced-scaffold na na JAFHLR010000054.1 = NW_027122742.1 Primary Assembly 2292 na contig_169 unplaced-scaffold na na JAFHLR010000055.1 = NW_027122743.1 Primary Assembly 2511 na contig_172 unplaced-scaffold na na JAFHLR010000056.1 = NW_027122744.1 Primary Assembly 759 na contig_174 unplaced-scaffold na na JAFHLR010000057.1 = NW_027122745.1 Primary Assembly 1781 na contig_179 unplaced-scaffold na na JAFHLR010000058.1 = NW_027122746.1 Primary Assembly 2841 na contig_180 unplaced-scaffold na na JAFHLR010000059.1 = NW_027122747.1 Primary Assembly 4665 na contig_192 unplaced-scaffold na na JAFHLR010000060.1 = NW_027122748.1 Primary Assembly 19787 na contig_193 unplaced-scaffold na na JAFHLR010000061.1 = NW_027122749.1 Primary Assembly 562 na contig_218 unplaced-scaffold na na JAFHLR010000062.1 = NW_027122750.1 Primary Assembly 37126 na contig_226 unplaced-scaffold na na JAFHLR010000063.1 = NW_027122751.1 Primary Assembly 13209 na contig_227 unplaced-scaffold na na JAFHLR010000064.1 = NW_027122752.1 Primary Assembly 498 na contig_231 unplaced-scaffold na na JAFHLR010000065.1 = NW_027122753.1 Primary Assembly 10704 na contig_247 unplaced-scaffold na na JAFHLR010000066.1 = NW_027122754.1 Primary Assembly 671 na contig_263 unplaced-scaffold na na JAFHLR010000067.1 = NW_027122755.1 Primary Assembly 1588 na contig_278 unplaced-scaffold na na JAFHLR010000068.1 = NW_027122756.1 Primary Assembly 33774 na contig_279 unplaced-scaffold na na JAFHLR010000069.1 = NW_027122757.1 Primary Assembly 635 na contig_287 unplaced-scaffold na na JAFHLR010000070.1 = NW_027122758.1 Primary Assembly 11296 na contig_294 unplaced-scaffold na na JAFHLR010000071.1 = NW_027122759.1 Primary Assembly 1002 na contig_3 unplaced-scaffold na na JAFHLR010000072.1 = NW_027122760.1 Primary Assembly 10546 na contig_311 unplaced-scaffold na na JAFHLR010000073.1 = NW_027122761.1 Primary Assembly 5144 na contig_312 unplaced-scaffold na na JAFHLR010000074.1 = NW_027122762.1 Primary Assembly 646 na contig_34 unplaced-scaffold na na JAFHLR010000075.1 = NW_027122763.1 Primary Assembly 559 na contig_343 unplaced-scaffold na na JAFHLR010000076.1 = NW_027122764.1 Primary Assembly 2045 na contig_348 unplaced-scaffold na na JAFHLR010000077.1 = NW_027122765.1 Primary Assembly 954 na contig_35 unplaced-scaffold na na JAFHLR010000078.1 = NW_027122766.1 Primary Assembly 2873 na contig_392 unplaced-scaffold na na JAFHLR010000079.1 = NW_027122767.1 Primary Assembly 1817 na contig_393 unplaced-scaffold na na JAFHLR010000080.1 = NW_027122768.1 Primary Assembly 2410 na contig_402 unplaced-scaffold na na JAFHLR010000081.1 = NW_027122769.1 Primary Assembly 6334 na contig_403 unplaced-scaffold na na JAFHLR010000082.1 = NW_027122770.1 Primary Assembly 2453 na contig_52 unplaced-scaffold na na JAFHLR010000083.1 = NW_027122771.1 Primary Assembly 762 na contig_53 unplaced-scaffold na na JAFHLR010000084.1 = NW_027122772.1 Primary Assembly 839 na contig_54 unplaced-scaffold na na JAFHLR010000085.1 = NW_027122773.1 Primary Assembly 814 na contig_58 unplaced-scaffold na na JAFHLR010000086.1 = NW_027122774.1 Primary Assembly 840 na contig_59 unplaced-scaffold na na JAFHLR010000087.1 = NW_027122775.1 Primary Assembly 741 na contig_60 unplaced-scaffold na na JAFHLR010000088.1 = NW_027122776.1 Primary Assembly 525 na contig_61 unplaced-scaffold na na JAFHLR010000089.1 = NW_027122777.1 Primary Assembly 2904 na contig_62 unplaced-scaffold na na JAFHLR010000090.1 = NW_027122778.1 Primary Assembly 1018 na contig_67 unplaced-scaffold na na JAFHLR010000091.1 = NW_027122779.1 Primary Assembly 2890 na contig_69 unplaced-scaffold na na JAFHLR010000092.1 = NW_027122780.1 Primary Assembly 526 na contig_71 unplaced-scaffold na na JAFHLR010000093.1 = NW_027122781.1 Primary Assembly 3835 na contig_72 unplaced-scaffold na na JAFHLR010000094.1 = NW_027122782.1 Primary Assembly 785 na contig_73 unplaced-scaffold na na JAFHLR010000095.1 = NW_027122783.1 Primary Assembly 538 na contig_74 unplaced-scaffold na na JAFHLR010000096.1 = NW_027122784.1 Primary Assembly 518 na contig_82 unplaced-scaffold na na JAFHLR010000097.1 = NW_027122785.1 Primary Assembly 1143 na contig_99 unplaced-scaffold na na JAFHLR010000098.1 = NW_027122786.1 Primary Assembly 1255 na