# Assembly name: bSylBor1.pri # Organism name: Sylvia borin (garden warbler) # Isolate: bSylBor1 # Sex: male # Taxid: 73324 # BioSample: SAMN12618613 # BioProject: PRJNA561945 # Submitter: Vertebrate Genomes Project # Date: 2020-10-02 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JACEWE01 # Assembly method: FALCON v. DX 2.0.0; FALCON-Unzip v. DX 1.1.0; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow polishing and gap filling v. DX 7.0.1.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-04-24; VGP assembly pipeline v. 1.6 # Expected final version: no # Genome coverage: 72.07x # Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_014839755.1 # Linked assembly: GCA_014839765.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_014839795.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM025957.1 <> na Primary Assembly 153146699 na SUPER_2 assembled-molecule 2 Chromosome CM025958.1 <> na Primary Assembly 115668550 na SUPER_3 assembled-molecule 3 Chromosome CM025959.1 <> na Primary Assembly 113688706 na SUPER_5 assembled-molecule 4 Chromosome CM025960.1 <> na Primary Assembly 72750092 na SUPER_6 assembled-molecule 5 Chromosome CM025961.1 <> na Primary Assembly 72287029 na SUPER_7 assembled-molecule 6 Chromosome CM025962.1 <> na Primary Assembly 63209239 na SUPER_8 assembled-molecule 7 Chromosome CM025963.1 <> na Primary Assembly 38753081 na SUPER_9 assembled-molecule 8 Chromosome CM025964.1 <> na Primary Assembly 36308713 na SUPER_10 assembled-molecule 9 Chromosome CM025965.1 <> na Primary Assembly 31186348 na SUPER_11 assembled-molecule 10 Chromosome CM025966.1 <> na Primary Assembly 25932543 na SUPER_12 assembled-molecule 11 Chromosome CM025967.1 <> na Primary Assembly 21187652 na SUPER_13 assembled-molecule 12 Chromosome CM025968.1 <> na Primary Assembly 20971763 na SUPER_14 assembled-molecule 13 Chromosome CM025969.1 <> na Primary Assembly 20233990 na SUPER_15 assembled-molecule 14 Chromosome CM025970.1 <> na Primary Assembly 17936819 na SUPER_16 assembled-molecule 15 Chromosome CM025971.1 <> na Primary Assembly 16023639 na SUPER_17 assembled-molecule 16 Chromosome CM025972.1 <> na Primary Assembly 15229038 na SUPER_18 assembled-molecule 17 Chromosome CM025973.1 <> na Primary Assembly 13843244 na SUPER_19 assembled-molecule 18 Chromosome CM025974.1 <> na Primary Assembly 11842372 na SUPER_20 assembled-molecule 19 Chromosome CM025975.1 <> na Primary Assembly 11163792 na SUPER_21 assembled-molecule 20 Chromosome CM025976.1 <> na Primary Assembly 11144250 na SUPER_22 assembled-molecule 21 Chromosome CM025977.1 <> na Primary Assembly 9886874 na SUPER_23 assembled-molecule 22 Chromosome CM025978.1 <> na Primary Assembly 7940416 na SUPER_24 assembled-molecule 23 Chromosome CM025979.1 <> na Primary Assembly 7370522 na SUPER_25 assembled-molecule 24 Chromosome CM025980.1 <> na Primary Assembly 6754201 na SUPER_26 assembled-molecule 25 Chromosome CM025981.1 <> na Primary Assembly 6536811 na SUPER_27 assembled-molecule 26 Chromosome CM025982.1 <> na Primary Assembly 6474447 na SUPER_28 assembled-molecule 27 Chromosome CM025983.1 <> na Primary Assembly 5913504 na SUPER_29 assembled-molecule 28 Chromosome CM025984.1 <> na Primary Assembly 4788288 na SUPER_30 assembled-molecule 29 Chromosome CM025985.1 <> na Primary Assembly 640409 na SUPER_31 assembled-molecule 30 Chromosome CM025986.1 <> na Primary Assembly 3284235 na SUPER_32 assembled-molecule 31 Chromosome CM025987.1 <> na Primary Assembly 2844169 na SUPER_33 assembled-molecule 32 Chromosome CM025988.1 <> na Primary Assembly 842208 na SUPER_34 assembled-molecule 33 Chromosome CM025989.1 <> na Primary Assembly 409870 na SUPER_35 assembled-molecule 34 Chromosome CM025990.1 <> na Primary Assembly 971604 na SUPER_36 assembled-molecule 35 Chromosome CM025991.1 <> na Primary Assembly 498863 na SUPER_37 assembled-molecule 36 Chromosome CM025992.1 <> na Primary Assembly 228732 na SUPER_4 assembled-molecule Z Chromosome CM025993.1 <> na Primary Assembly 86481582 na SUPER_30_unloc_2 unlocalized-scaffold 29 Chromosome JACEWE010000044.1 <> na Primary Assembly 436915 na SUPER_30_unloc_3 unlocalized-scaffold 29 Chromosome JACEWE010000045.1 <> na Primary Assembly 397147 na SUPER_30_unloc_1 unlocalized-scaffold 29 Chromosome JACEWE010000046.1 <> na Primary Assembly 612783 na SUPER_30_unloc_4 unlocalized-scaffold 29 Chromosome JACEWE010000047.1 <> na Primary Assembly 308550 na SUPER_30_unloc_5 unlocalized-scaffold 29 Chromosome JACEWE010000048.1 <> na Primary Assembly 287520 na SUPER_30_unloc_6 unlocalized-scaffold 29 Chromosome JACEWE010000049.1 <> na Primary Assembly 199714 na SUPER_30_unloc_7 unlocalized-scaffold 29 Chromosome JACEWE010000050.1 <> na Primary Assembly 178046 na SUPER_30_unloc_8 unlocalized-scaffold 29 Chromosome JACEWE010000051.1 <> na Primary Assembly 172084 na SUPER_30_unloc_9 unlocalized-scaffold 29 Chromosome JACEWE010000052.1 <> na Primary Assembly 153608 na SUPER_30_unloc_11 unlocalized-scaffold 29 Chromosome JACEWE010000053.1 <> na Primary Assembly 125780 na SUPER_30_unloc_12 unlocalized-scaffold 29 Chromosome JACEWE010000054.1 <> na Primary Assembly 99826 na SUPER_30_unloc_13 unlocalized-scaffold 29 Chromosome JACEWE010000055.1 <> na Primary Assembly 96900 na SUPER_30_unloc_14 unlocalized-scaffold 29 Chromosome JACEWE010000056.1 <> na Primary Assembly 92579 na SUPER_30_unloc_15 unlocalized-scaffold 29 Chromosome JACEWE010000057.1 <> na Primary Assembly 79221 na SUPER_30_unloc_16 unlocalized-scaffold 29 Chromosome JACEWE010000058.1 <> na Primary Assembly 69508 na SUPER_30_unloc_17 unlocalized-scaffold 29 Chromosome JACEWE010000059.1 <> na Primary Assembly 66032 na SUPER_30_unloc_18 unlocalized-scaffold 29 Chromosome JACEWE010000060.1 <> na Primary Assembly 65277 na SUPER_30_unloc_19 unlocalized-scaffold 29 Chromosome JACEWE010000061.1 <> na Primary Assembly 49607 na SUPER_30_unloc_20 unlocalized-scaffold 29 Chromosome JACEWE010000062.1 <> na Primary Assembly 48286 na SUPER_30_unloc_21 unlocalized-scaffold 29 Chromosome JACEWE010000063.1 <> na Primary Assembly 48129 na SUPER_30_unloc_22 unlocalized-scaffold 29 Chromosome JACEWE010000064.1 <> na Primary Assembly 47691 na SUPER_30_unloc_23 unlocalized-scaffold 29 Chromosome JACEWE010000065.1 <> na Primary Assembly 45416 na SUPER_30_unloc_24 unlocalized-scaffold 29 Chromosome JACEWE010000066.1 <> na Primary Assembly 34437 na SUPER_30_unloc_26 unlocalized-scaffold 29 Chromosome JACEWE010000067.1 <> na Primary Assembly 32063 na SUPER_30_unloc_27 unlocalized-scaffold 29 Chromosome JACEWE010000068.1 <> na Primary Assembly 29433 na SUPER_30_unloc_28 unlocalized-scaffold 29 Chromosome JACEWE010000069.1 <> na Primary Assembly 26013 na SUPER_30_unloc_29 unlocalized-scaffold 29 Chromosome JACEWE010000070.1 <> na Primary Assembly 20488 na SUPER_30_unloc_25 unlocalized-scaffold 29 Chromosome JACEWE010000071.1 <> na Primary Assembly 32696 na SUPER_30_unloc_10 unlocalized-scaffold 29 Chromosome JACEWE010000073.1 <> na Primary Assembly 134742 na SUPER_31_unloc_1 unlocalized-scaffold 30 Chromosome JACEWE010000032.1 <> na Primary Assembly 37925 na SUPER_33_unloc_1 unlocalized-scaffold 32 Chromosome JACEWE010000041.1 <> na Primary Assembly 596734 na SUPER_33_unloc_3 unlocalized-scaffold 32 Chromosome JACEWE010000042.1 <> na Primary Assembly 116489 na SUPER_33_unloc_2 unlocalized-scaffold 32 Chromosome JACEWE010000043.1 <> na Primary Assembly 261096 na SUPER_34_unloc_1 unlocalized-scaffold 33 Chromosome JACEWE010000075.1 <> na Primary Assembly 353720 na SUPER_34_unloc_2 unlocalized-scaffold 33 Chromosome JACEWE010000076.1 <> na Primary Assembly 260147 na SUPER_34_unloc_3 unlocalized-scaffold 33 Chromosome JACEWE010000077.1 <> na Primary Assembly 226948 na SUPER_34_unloc_5 unlocalized-scaffold 33 Chromosome JACEWE010000078.1 <> na Primary Assembly 136883 na SUPER_34_unloc_4 unlocalized-scaffold 33 Chromosome JACEWE010000079.1 <> na Primary Assembly 158739 na SUPER_34_unloc_7 unlocalized-scaffold 33 Chromosome JACEWE010000080.1 <> na Primary Assembly 38400 na SUPER_34_unloc_6 unlocalized-scaffold 33 Chromosome JACEWE010000081.1 <> na Primary Assembly 57584 na SUPER_35_unloc_2 unlocalized-scaffold 34 Chromosome JACEWE010000034.1 <> na Primary Assembly 124264 na SUPER_35_unloc_3 unlocalized-scaffold 34 Chromosome JACEWE010000035.1 <> na Primary Assembly 86211 na SUPER_35_unloc_6 unlocalized-scaffold 34 Chromosome JACEWE010000036.1 <> na Primary Assembly 46447 na SUPER_35_unloc_5 unlocalized-scaffold 34 Chromosome JACEWE010000037.1 <> na Primary Assembly 77430 na SUPER_35_unloc_1 unlocalized-scaffold 34 Chromosome JACEWE010000038.1 <> na Primary Assembly 124612 na SUPER_35_unloc_4 unlocalized-scaffold 34 Chromosome JACEWE010000039.1 <> na Primary Assembly 86045 na SUPER_36_unloc_1 unlocalized-scaffold 35 Chromosome JACEWE010000083.1 <> na Primary Assembly 147887 na SUPER_36_unloc_3 unlocalized-scaffold 35 Chromosome JACEWE010000084.1 <> na Primary Assembly 70253 na SUPER_36_unloc_2 unlocalized-scaffold 35 Chromosome JACEWE010000085.1 <> na Primary Assembly 105949 na SUPER_36_unloc_4 unlocalized-scaffold 35 Chromosome JACEWE010000086.1 <> na Primary Assembly 45763 na SUPER_37_unloc_1 unlocalized-scaffold 36 Chromosome JACEWE010000088.1 <> na Primary Assembly 187201 na SUPER_37_unloc_2 unlocalized-scaffold 36 Chromosome JACEWE010000089.1 <> na Primary Assembly 156702 na scaffold_102_arrow_ctg1 unplaced-scaffold na na JACEWE010000101.1 <> na Primary Assembly 118432 na scaffold_104_arrow_ctg1 unplaced-scaffold na na JACEWE010000097.1 <> na Primary Assembly 114860 na scaffold_107_arrow_ctg1 unplaced-scaffold na na JACEWE010000102.1 <> na Primary Assembly 105108 na scaffold_109_arrow_ctg1 unplaced-scaffold na na JACEWE010000103.1 <> na Primary Assembly 98909 na scaffold_115_arrow_ctg1 unplaced-scaffold na na JACEWE010000104.1 <> na Primary Assembly 86028 na scaffold_116_arrow_ctg1 unplaced-scaffold na na JACEWE010000099.1 <> na Primary Assembly 84009 na scaffold_121_arrow_ctg1 unplaced-scaffold na na JACEWE010000105.1 <> na Primary Assembly 66886 na scaffold_123_arrow_ctg1 unplaced-scaffold na na JACEWE010000106.1 <> na Primary Assembly 65536 na scaffold_124_arrow_ctg1 unplaced-scaffold na na JACEWE010000107.1 <> na Primary Assembly 65509 na scaffold_127_arrow_ctg1 unplaced-scaffold na na JACEWE010000108.1 <> na Primary Assembly 60739 na scaffold_128_arrow_ctg1 unplaced-scaffold na na JACEWE010000109.1 <> na Primary Assembly 58532 na scaffold_129_arrow_ctg1 unplaced-scaffold na na JACEWE010000110.1 <> na Primary Assembly 57717 na scaffold_132_arrow_ctg1 unplaced-scaffold na na JACEWE010000111.1 <> na Primary Assembly 56594 na scaffold_133_arrow_ctg1 unplaced-scaffold na na JACEWE010000112.1 <> na Primary Assembly 55665 na scaffold_134_arrow_ctg1 unplaced-scaffold na na JACEWE010000098.1 <> na Primary Assembly 54999 na scaffold_135_arrow_ctg1 unplaced-scaffold na na JACEWE010000113.1 <> na Primary Assembly 54069 na scaffold_136_arrow_ctg1 unplaced-scaffold na na JACEWE010000114.1 <> na Primary Assembly 53032 na scaffold_140_arrow_ctg1 unplaced-scaffold na na JACEWE010000115.1 <> na Primary Assembly 48283 na scaffold_141_arrow_ctg1 unplaced-scaffold na na JACEWE010000116.1 <> na Primary Assembly 48069 na scaffold_145_arrow_ctg1 unplaced-scaffold na na JACEWE010000117.1 <> na Primary Assembly 47350 na scaffold_146_arrow_ctg1 unplaced-scaffold na na JACEWE010000118.1 <> na Primary Assembly 47107 na scaffold_149_arrow_ctg1 unplaced-scaffold na na JACEWE010000119.1 <> na Primary Assembly 46170 na scaffold_151_arrow_ctg1 unplaced-scaffold na na JACEWE010000120.1 <> na Primary Assembly 43658 na scaffold_152_arrow_ctg1 unplaced-scaffold na na JACEWE010000121.1 <> na Primary Assembly 41626 na scaffold_153_arrow_ctg1 unplaced-scaffold na na JACEWE010000122.1 <> na Primary Assembly 39447 na scaffold_154_arrow_ctg1 unplaced-scaffold na na JACEWE010000123.1 <> na Primary Assembly 38841 na scaffold_156_arrow_ctg1 unplaced-scaffold na na JACEWE010000124.1 <> na Primary Assembly 38367 na scaffold_157_arrow_ctg1 unplaced-scaffold na na JACEWE010000125.1 <> na Primary Assembly 38156 na scaffold_159_arrow_ctg1 unplaced-scaffold na na JACEWE010000126.1 <> na Primary Assembly 36658 na scaffold_160_arrow_ctg1 unplaced-scaffold na na JACEWE010000127.1 <> na Primary Assembly 36009 na scaffold_161_arrow_ctg1 unplaced-scaffold na na JACEWE010000128.1 <> na Primary Assembly 36033 na scaffold_164_arrow_ctg1 unplaced-scaffold na na JACEWE010000129.1 <> na Primary Assembly 34082 na scaffold_165_arrow_ctg1 unplaced-scaffold na na JACEWE010000130.1 <> na Primary Assembly 33995 na scaffold_166_arrow_ctg1 unplaced-scaffold na na JACEWE010000131.1 <> na Primary Assembly 33106 na scaffold_170_arrow_ctg1 unplaced-scaffold na na JACEWE010000100.1 <> na Primary Assembly 29050 na scaffold_172_arrow_ctg1 unplaced-scaffold na na JACEWE010000132.1 <> na Primary Assembly 27497 na scaffold_173_arrow_ctg1 unplaced-scaffold na na JACEWE010000133.1 <> na Primary Assembly 26676 na scaffold_174_arrow_ctg1 unplaced-scaffold na na JACEWE010000134.1 <> na Primary Assembly 26687 na scaffold_176_arrow_ctg1 unplaced-scaffold na na JACEWE010000135.1 <> na Primary Assembly 24382 na scaffold_177_arrow_ctg1 unplaced-scaffold na na JACEWE010000136.1 <> na Primary Assembly 24095 na scaffold_178_arrow_ctg1 unplaced-scaffold na na JACEWE010000137.1 <> na Primary Assembly 23725 na scaffold_179_arrow_ctg1 unplaced-scaffold na na JACEWE010000138.1 <> na Primary Assembly 23663 na scaffold_180_arrow_ctg1 unplaced-scaffold na na JACEWE010000139.1 <> na Primary Assembly 22880 na scaffold_181_arrow_ctg1 unplaced-scaffold na na JACEWE010000140.1 <> na Primary Assembly 22338 na scaffold_182_arrow_ctg1 unplaced-scaffold na na JACEWE010000141.1 <> na Primary Assembly 22219 na scaffold_183_arrow_ctg1 unplaced-scaffold na na JACEWE010000142.1 <> na Primary Assembly 22062 na scaffold_185_arrow_ctg1 unplaced-scaffold na na JACEWE010000143.1 <> na Primary Assembly 20113 na scaffold_186_arrow_ctg1 unplaced-scaffold na na JACEWE010000144.1 <> na Primary Assembly 19980 na scaffold_187_arrow_ctg1 unplaced-scaffold na na JACEWE010000145.1 <> na Primary Assembly 19916 na scaffold_188_arrow_ctg1 unplaced-scaffold na na JACEWE010000146.1 <> na Primary Assembly 17639 na scaffold_189_arrow_ctg1 unplaced-scaffold na na JACEWE010000147.1 <> na Primary Assembly 17574 na scaffold_190_arrow_ctg1 unplaced-scaffold na na JACEWE010000148.1 <> na Primary Assembly 17521 na scaffold_191_arrow_ctg1 unplaced-scaffold na na JACEWE010000149.1 <> na Primary Assembly 17427 na scaffold_192_arrow_ctg1 unplaced-scaffold na na JACEWE010000150.1 <> na Primary Assembly 16808 na scaffold_193_arrow_ctg1 unplaced-scaffold na na JACEWE010000151.1 <> na Primary Assembly 16220 na scaffold_194_arrow_ctg1 unplaced-scaffold na na JACEWE010000152.1 <> na Primary Assembly 15836 na scaffold_195_arrow_ctg1 unplaced-scaffold na na JACEWE010000153.1 <> na Primary Assembly 15457 na scaffold_196_arrow_ctg1 unplaced-scaffold na na JACEWE010000154.1 <> na Primary Assembly 14477 na scaffold_197_arrow_ctg1 unplaced-scaffold na na JACEWE010000090.1 <> na Primary Assembly 13996 na scaffold_198_arrow_ctg1 unplaced-scaffold na na JACEWE010000155.1 <> na Primary Assembly 13142 na scaffold_199_arrow_ctg1 unplaced-scaffold na na JACEWE010000091.1 <> na Primary Assembly 13025 na scaffold_200_arrow_ctg1 unplaced-scaffold na na JACEWE010000156.1 <> na Primary Assembly 12957 na scaffold_201_arrow_ctg1 unplaced-scaffold na na JACEWE010000092.1 <> na Primary Assembly 12830 na scaffold_202_arrow_ctg1 unplaced-scaffold na na JACEWE010000157.1 <> na Primary Assembly 12478 na scaffold_203_arrow_ctg1 unplaced-scaffold na na JACEWE010000158.1 <> na Primary Assembly 11989 na scaffold_204_arrow_ctg1 unplaced-scaffold na na JACEWE010000093.1 <> na Primary Assembly 10385 na scaffold_205_arrow_ctg1 unplaced-scaffold na na JACEWE010000159.1 <> na Primary Assembly 9761 na scaffold_206_arrow_ctg1 unplaced-scaffold na na JACEWE010000160.1 <> na Primary Assembly 8941 na scaffold_207_arrow_ctg1 unplaced-scaffold na na JACEWE010000161.1 <> na Primary Assembly 8508 na scaffold_208_arrow_ctg1 unplaced-scaffold na na JACEWE010000094.1 <> na Primary Assembly 8406 na scaffold_209_arrow_ctg1 unplaced-scaffold na na JACEWE010000162.1 <> na Primary Assembly 7868 na scaffold_210_arrow_ctg1 unplaced-scaffold na na JACEWE010000163.1 <> na Primary Assembly 7866 na scaffold_211_arrow_ctg1 unplaced-scaffold na na JACEWE010000164.1 <> na Primary Assembly 7677 na scaffold_212_arrow_ctg1 unplaced-scaffold na na JACEWE010000095.1 <> na Primary Assembly 7622 na scaffold_213_arrow_ctg1 unplaced-scaffold na na JACEWE010000165.1 <> na Primary Assembly 7052 na scaffold_214_arrow_ctg1 unplaced-scaffold na na JACEWE010000166.1 <> na Primary Assembly 5496 na scaffold_215_arrow_ctg1 unplaced-scaffold na na JACEWE010000167.1 <> na Primary Assembly 4431 na scaffold_216_arrow_ctg1 unplaced-scaffold na na JACEWE010000168.1 <> na Primary Assembly 3937 na scaffold_217_arrow_ctg1 unplaced-scaffold na na JACEWE010000169.1 <> na Primary Assembly 2711 na scaffold_218_arrow_ctg1 unplaced-scaffold na na JACEWE010000096.1 <> na Primary Assembly 1863 na scaffold_219_arrow_ctg1 unplaced-scaffold na na JACEWE010000170.1 <> na Primary Assembly 1265 na scaffold_70_arrow_ctg1 unplaced-scaffold na na JACEWE010000171.1 <> na Primary Assembly 290927 na scaffold_77_arrow_ctg1 unplaced-scaffold na na JACEWE010000172.1 <> na Primary Assembly 215225 na scaffold_78_arrow_ctg1 unplaced-scaffold na na JACEWE010000173.1 <> na Primary Assembly 210273 na scaffold_87_arrow_ctg1 unplaced-scaffold na na JACEWE010000174.1 <> na Primary Assembly 157907 na scaffold_96_arrow_ctg1 unplaced-scaffold na na JACEWE010000175.1 <> na Primary Assembly 134101 na scaffold_97_arrow_ctg1 unplaced-scaffold na na JACEWE010000176.1 <> na Primary Assembly 133504 na