RepeatModeler Version 2.0.4
===========================
Using output directory = /dev/shm/rModeler.qJQ7TY/RM_23109.TueJun251629352024
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1719358174
Database = /dev/shm/rModeler.qJQ7TY/GCA_012516315.1_ASM1251631v1   - Sequences = 1
  - Bases = 6423694
Storage Throughput = good ( 799.09 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 6423600 bp ( 6423600 non ambiguous )
   - Num Contigs Represented = 1
   - Sequence extraction : 00:00:02 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:02:29 (hh:mm:ss) Elapsed Time
Round Time: 00:03:50 (hh:mm:ss) Elapsed Time : 62 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:01 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:12 (hh:mm:ss) Elapsed Time
 -- Masking repeats from the previous rounds...
       2238 repeats masked totaling 878336 bp(s).
   - TE Masking time 00:00:03 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 6423600 bp
       Num Contigs Represented = 1
       Non ambiguous bp:
             Initial: 6423600 bp
             After Masking: 5300113 bp
             Masked: 17.49 % 
 -- Input Database Coverage: 6423600 bp out of 6423694 bp ( 100.00 % )
Sampling Time: 00:00:17 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 12880
Comparison Time: 00:02:24 (hh:mm:ss) Elapsed Time, 5413 HSPs Collected
Number of families returned by RECON: 919
Round Time: 00:02:51 (hh:mm:ss) Elapsed Time : 2 families discovered.

RepeatScout/RECON discovery complete: 64 families found


Classification Time: 00:02:19 (hh:mm:ss) Elapsed Time


Program Time: 00:09:00 (hh:mm:ss) Elapsed Time