# Assembly name: bBalReg1.pri # Organism name: Balearica regulorum gibbericeps (East African grey crowned-crane) # Isolate: bBalReg1 # Sex: female # Taxid: 100784 # BioSample: SAMN12615749 # BioProject: PRJNA561890 # Submitter: Vertebrate Genomes Project # Date: 2020-03-05 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAAIYC01 # Assembly method: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-12-04; VGP assembly pipeline individual v. 1.6 # Expected final version: no # Genome coverage: 59.56x # Sequencing technology: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # GenBank assembly accession: GCA_011004875.1 # Linked assembly: GCA_011004865.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_011005075.1 Primary Assembly ## GCA_011005105.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name S2 assembled-molecule 1 Chromosome CM021618.1 <> na Primary Assembly 219267915 na S1 assembled-molecule 2 Chromosome CM021619.1 <> na Primary Assembly 168560466 na S3 assembled-molecule 3 Chromosome CM021620.1 <> na Primary Assembly 126494509 na S4 assembled-molecule 4 Chromosome CM021621.1 <> na Primary Assembly 82577926 na S5 assembled-molecule 5 Chromosome CM021622.1 <> na Primary Assembly 71435996 na S7 assembled-molecule 6 Chromosome CM021623.1 <> na Primary Assembly 43584254 na S8 assembled-molecule 7 Chromosome CM021624.1 <> na Primary Assembly 41402003 na S9 assembled-molecule 8 Chromosome CM021625.1 <> na Primary Assembly 36293307 na S10 assembled-molecule 9 Chromosome CM021626.1 <> na Primary Assembly 29641262 na S13 assembled-molecule 10 Chromosome CM021627.1 <> na Primary Assembly 24828647 na S12 assembled-molecule 11 Chromosome CM021628.1 <> na Primary Assembly 24411880 na S15 assembled-molecule 12 Chromosome CM021629.1 <> na Primary Assembly 24096099 na S14 assembled-molecule 13 Chromosome CM021630.1 <> na Primary Assembly 23271930 na S16 assembled-molecule 14 Chromosome CM021631.1 <> na Primary Assembly 21959113 na S17 assembled-molecule 15 Chromosome CM021632.1 <> na Primary Assembly 19200437 na S18 assembled-molecule 16 Chromosome CM021633.1 <> na Primary Assembly 17475937 na S19 assembled-molecule 17 Chromosome CM021634.1 <> na Primary Assembly 16783481 na S22 assembled-molecule 18 Chromosome CM021635.1 <> na Primary Assembly 14238113 na S23 assembled-molecule 19 Chromosome CM021636.1 <> na Primary Assembly 13071912 na S24 assembled-molecule 20 Chromosome CM021637.1 <> na Primary Assembly 12992293 na S21 assembled-molecule 21 Chromosome CM021638.1 <> na Primary Assembly 9392298 na S25 assembled-molecule 22 Chromosome CM021639.1 <> na Primary Assembly 8432973 na S28 assembled-molecule 23 Chromosome CM021640.1 <> na Primary Assembly 7932461 na S27 assembled-molecule 24 Chromosome CM021641.1 <> na Primary Assembly 7860168 na S26 assembled-molecule 25 Chromosome CM021642.1 <> na Primary Assembly 7517111 na S29 assembled-molecule 26 Chromosome CM021643.1 <> na Primary Assembly 6172086 na S20 assembled-molecule 27 Chromosome CM021644.1 <> na Primary Assembly 6153716 na S30 assembled-molecule 28 Chromosome CM021645.1 <> na Primary Assembly 3552857 na S31 assembled-molecule 29 Chromosome CM021646.1 <> na Primary Assembly 2813318 na S33 assembled-molecule 30 Chromosome CM021647.1 <> na Primary Assembly 1385689 na S32 assembled-molecule 31 Chromosome CM021648.1 <> na Primary Assembly 1212036 na S37 assembled-molecule 32 Chromosome CM021649.1 <> na Primary Assembly 938009 na S34 assembled-molecule 33 Chromosome CM021650.1 <> na Primary Assembly 660858 na S40 assembled-molecule 34 Chromosome CM021651.1 <> na Primary Assembly 636664 na S38 assembled-molecule 35 Chromosome CM021652.1 <> na Primary Assembly 517469 na S11 assembled-molecule W Chromosome CM021654.1 <> na Primary Assembly 31083356 na S6 assembled-molecule Z Chromosome CM021653.1 <> na Primary Assembly 87595863 na S35 unplaced-scaffold na na JAAIYC010000035.1 <> na Primary Assembly 407134 na S36 unplaced-scaffold na na JAAIYC010000036.1 <> na Primary Assembly 365525 na S39 unplaced-scaffold na na JAAIYC010000039.1 <> na Primary Assembly 252560 na S41 unplaced-scaffold na na JAAIYC010000041.1 <> na Primary Assembly 295935 na scaffold_100_arrow_ctg1 unplaced-scaffold na na JAAIYC010000042.1 <> na Primary Assembly 51974 na scaffold_101_arrow_ctg1 unplaced-scaffold na na JAAIYC010000043.1 <> na Primary Assembly 51342 na scaffold_102_arrow_ctg1 unplaced-scaffold na na JAAIYC010000044.1 <> na Primary Assembly 50649 na scaffold_103_arrow_ctg1 unplaced-scaffold na na JAAIYC010000045.1 <> na Primary Assembly 47971 na scaffold_104_arrow_ctg1 unplaced-scaffold na na JAAIYC010000046.1 <> na Primary Assembly 45955 na scaffold_107_arrow_ctg1 unplaced-scaffold na na JAAIYC010000047.1 <> na Primary Assembly 39707 na scaffold_108_arrow_ctg1 unplaced-scaffold na na JAAIYC010000048.1 <> na Primary Assembly 39500 na scaffold_109_arrow_ctg1 unplaced-scaffold na na JAAIYC010000049.1 <> na Primary Assembly 39210 na scaffold_110_arrow_ctg1 unplaced-scaffold na na JAAIYC010000050.1 <> na Primary Assembly 37938 na scaffold_113_arrow_ctg1 unplaced-scaffold na na JAAIYC010000051.1 <> na Primary Assembly 36709 na scaffold_114_arrow_ctg1 unplaced-scaffold na na JAAIYC010000052.1 <> na Primary Assembly 36380 na scaffold_115_arrow_ctg1 unplaced-scaffold na na JAAIYC010000053.1 <> na Primary Assembly 34249 na scaffold_116_arrow_ctg1 unplaced-scaffold na na JAAIYC010000054.1 <> na Primary Assembly 33751 na scaffold_117_arrow_ctg1 unplaced-scaffold na na JAAIYC010000055.1 <> na Primary Assembly 34896 na scaffold_118_arrow_ctg1 unplaced-scaffold na na JAAIYC010000056.1 <> na Primary Assembly 32816 na scaffold_119_arrow_ctg1 unplaced-scaffold na na JAAIYC010000057.1 <> na Primary Assembly 29577 na scaffold_120_arrow_ctg1 unplaced-scaffold na na JAAIYC010000058.1 <> na Primary Assembly 28043 na scaffold_121_arrow_ctg1 unplaced-scaffold na na JAAIYC010000059.1 <> na Primary Assembly 27523 na scaffold_122_arrow_ctg1 unplaced-scaffold na na JAAIYC010000060.1 <> na Primary Assembly 26048 na scaffold_123_arrow_ctg1 unplaced-scaffold na na JAAIYC010000061.1 <> na Primary Assembly 25165 na scaffold_124_arrow_ctg1 unplaced-scaffold na na JAAIYC010000062.1 <> na Primary Assembly 23162 na scaffold_125_arrow_ctg1 unplaced-scaffold na na JAAIYC010000063.1 <> na Primary Assembly 23253 na scaffold_126_arrow_ctg1 unplaced-scaffold na na JAAIYC010000064.1 <> na Primary Assembly 22711 na scaffold_127_arrow_ctg1 unplaced-scaffold na na JAAIYC010000065.1 <> na Primary Assembly 20529 na scaffold_129_arrow_ctg1 unplaced-scaffold na na JAAIYC010000066.1 <> na Primary Assembly 17457 na scaffold_130_arrow_ctg1 unplaced-scaffold na na JAAIYC010000067.1 <> na Primary Assembly 15546 na scaffold_131_arrow_ctg1 unplaced-scaffold na na JAAIYC010000068.1 <> na Primary Assembly 13551 na scaffold_132_arrow_ctg1 unplaced-scaffold na na JAAIYC010000069.1 <> na Primary Assembly 12541 na scaffold_133_arrow_ctg1 unplaced-scaffold na na JAAIYC010000070.1 <> na Primary Assembly 12472 na scaffold_134_arrow_ctg1 unplaced-scaffold na na JAAIYC010000071.1 <> na Primary Assembly 12014 na scaffold_135_arrow_ctg1 unplaced-scaffold na na JAAIYC010000072.1 <> na Primary Assembly 12151 na scaffold_136_arrow_ctg1 unplaced-scaffold na na JAAIYC010000073.1 <> na Primary Assembly 11822 na scaffold_137_arrow_ctg1 unplaced-scaffold na na JAAIYC010000074.1 <> na Primary Assembly 11790 na scaffold_138_arrow_ctg1 unplaced-scaffold na na JAAIYC010000075.1 <> na Primary Assembly 11664 na scaffold_139_arrow_ctg1 unplaced-scaffold na na JAAIYC010000076.1 <> na Primary Assembly 11433 na scaffold_140_arrow_ctg1 unplaced-scaffold na na JAAIYC010000077.1 <> na Primary Assembly 9293 na scaffold_141_arrow_ctg1 unplaced-scaffold na na JAAIYC010000078.1 <> na Primary Assembly 7130 na scaffold_142_arrow_ctg1 unplaced-scaffold na na JAAIYC010000079.1 <> na Primary Assembly 6682 na scaffold_143_arrow_ctg1 unplaced-scaffold na na JAAIYC010000080.1 <> na Primary Assembly 1068 na scaffold_57_arrow_ctg1 unplaced-scaffold na na JAAIYC010000081.1 <> na Primary Assembly 462428 na scaffold_62_arrow_ctg1 unplaced-scaffold na na JAAIYC010000082.1 <> na Primary Assembly 71234 na scaffold_66_arrow_ctg1 unplaced-scaffold na na JAAIYC010000083.1 <> na Primary Assembly 145337 na scaffold_68_arrow_ctg1 unplaced-scaffold na na JAAIYC010000084.1 <> na Primary Assembly 233970 na scaffold_70_arrow_ctg1 unplaced-scaffold na na JAAIYC010000085.1 <> na Primary Assembly 209202 na scaffold_74_arrow_ctg1 unplaced-scaffold na na JAAIYC010000086.1 <> na Primary Assembly 167017 na scaffold_76_arrow_ctg1 unplaced-scaffold na na JAAIYC010000087.1 <> na Primary Assembly 147165 na scaffold_77_arrow_ctg1 unplaced-scaffold na na JAAIYC010000088.1 <> na Primary Assembly 126543 na scaffold_78_arrow_ctg1 unplaced-scaffold na na JAAIYC010000089.1 <> na Primary Assembly 109272 na scaffold_83_arrow_ctg1 unplaced-scaffold na na JAAIYC010000090.1 <> na Primary Assembly 94499 na scaffold_85_arrow_ctg1 unplaced-scaffold na na JAAIYC010000091.1 <> na Primary Assembly 89631 na scaffold_86_arrow_ctg1 unplaced-scaffold na na JAAIYC010000092.1 <> na Primary Assembly 86051 na scaffold_88_arrow_ctg1 unplaced-scaffold na na JAAIYC010000093.1 <> na Primary Assembly 76183 na scaffold_89_arrow_ctg1 unplaced-scaffold na na JAAIYC010000094.1 <> na Primary Assembly 75367 na scaffold_90_arrow_ctg1 unplaced-scaffold na na JAAIYC010000095.1 <> na Primary Assembly 73356 na scaffold_91_arrow_ctg1 unplaced-scaffold na na JAAIYC010000096.1 <> na Primary Assembly 72817 na scaffold_92_arrow_ctg1 unplaced-scaffold na na JAAIYC010000097.1 <> na Primary Assembly 72526 na scaffold_95_arrow_ctg1 unplaced-scaffold na na JAAIYC010000098.1 <> na Primary Assembly 64900 na scaffold_96_arrow_ctg1 unplaced-scaffold na na JAAIYC010000099.1 <> na Primary Assembly 64830 na scaffold_98_arrow_ctg1 unplaced-scaffold na na JAAIYC010000100.1 <> na Primary Assembly 58449 na scaffold_99_arrow_ctg1 unplaced-scaffold na na JAAIYC010000101.1 <> na Primary Assembly 52695 na scaffold_26_arrow_ctg1 unplaced-scaffold na na JAAIYC010000102.1 <> na Primary Assembly 220924 na scaffold_34_arrow_ctg1 unplaced-scaffold na na JAAIYC010000103.1 <> na Primary Assembly 417432 na scaffold_51_arrow_ctg1 unplaced-scaffold na na JAAIYC010000104.1 <> na Primary Assembly 69482 na bBalReg1_MT assembled-molecule MT Mitochondrion CM021656.1 <> na non-nuclear 19234 na