# Assembly name: bSteHir1.pri # Organism name: Sterna hirundo (Common tern) # Isolate: bSteHir1 # Sex: female # Taxid: 108405 # BioSample: SAMN12369541 # BioProject: PRJNA558062 # Submitter: Vertebrate Genomes Project # Date: 2019-12-31 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: WNMW01 # Assembly method: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-08-20; VGP assembly pipeline individual v. 1.5 # Expected final version: no # Genome coverage: 67.91x # Sequencing technology: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS # RefSeq category: Representative Genome # GenBank assembly accession: GCA_009819605.1 # Linked assembly: GCA_009819645.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009819665.1 Primary Assembly ## GCA_009819675.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Super_scaffold_1 assembled-molecule 1 Chromosome CM020437.1 <> na Primary Assembly 220148669 na Super_scaffold_3 assembled-molecule 2 Chromosome CM020438.1 <> na Primary Assembly 166723279 na Super_scaffold_2 assembled-molecule 3 Chromosome CM020439.1 <> na Primary Assembly 132030966 na Super_scaffold_5 assembled-molecule 4 Chromosome CM020440.1 <> na Primary Assembly 85487239 na Super_scaffold_6 assembled-molecule 5 Chromosome CM020441.1 <> na Primary Assembly 83246160 na Super_scaffold_7 assembled-molecule 6 Chromosome CM020442.1 <> na Primary Assembly 71796992 na Super_scaffold_8 assembled-molecule 7 Chromosome CM020443.1 <> na Primary Assembly 65923185 na Super_scaffold_10 assembled-molecule 8 Chromosome CM020444.1 <> na Primary Assembly 47789797 na Super_scaffold_11 assembled-molecule 9 Chromosome CM020445.1 <> na Primary Assembly 46478198 na Super_scaffold_12 assembled-molecule 10 Chromosome CM020446.1 <> na Primary Assembly 44515209 na Super_scaffold_13 assembled-molecule 11 Chromosome CM020447.1 <> na Primary Assembly 35020955 na Super_scaffold_15 assembled-molecule 12 Chromosome CM020448.1 <> na Primary Assembly 14799761 na Super_scaffold_9 assembled-molecule 13 Chromosome CM020449.1 <> na Primary Assembly 13215435 na Super_scaffold_14 assembled-molecule 14 Chromosome CM020450.1 <> na Primary Assembly 13127584 na Super_scaffold_17 assembled-molecule 15 Chromosome CM020451.1 <> na Primary Assembly 9621254 na Super_scaffold_22 assembled-molecule 16 Chromosome CM020452.1 <> na Primary Assembly 8745396 na Super_scaffold_18 assembled-molecule 17 Chromosome CM020453.1 <> na Primary Assembly 8427060 na Super_scaffold_19 assembled-molecule 18 Chromosome CM020454.1 <> na Primary Assembly 8113731 na Super_scaffold_21 assembled-molecule 19 Chromosome CM020455.1 <> na Primary Assembly 7720166 na Super_scaffold_23 assembled-molecule 20 Chromosome CM020456.1 <> na Primary Assembly 6725544 na Super_scaffold_20 assembled-molecule 21 Chromosome CM020457.1 <> na Primary Assembly 6619100 na Super_scaffold_24 assembled-molecule 22 Chromosome CM020458.1 <> na Primary Assembly 3569166 na Super_scaffold_25 assembled-molecule 23 Chromosome CM020459.1 <> na Primary Assembly 2984969 na Super_scaffold_27 assembled-molecule 24 Chromosome CM020460.1 <> na Primary Assembly 1104833 na Super_scaffold_26 assembled-molecule 25 Chromosome CM020461.1 <> na Primary Assembly 1071150 na Super_scaffold_16 assembled-molecule W Chromosome CM020463.1 <> na Primary Assembly 30244496 na Super_scaffold_4 assembled-molecule Z Chromosome CM020462.1 <> na Primary Assembly 85551617 na scaffold_100_arrow_ctg1 unplaced-scaffold na na WNMW01000028.1 <> na Primary Assembly 45752 na scaffold_101_arrow_ctg1 unplaced-scaffold na na WNMW01000029.1 <> na Primary Assembly 44710 na scaffold_102_arrow_ctg1 unplaced-scaffold na na WNMW01000030.1 <> na Primary Assembly 41824 na scaffold_103_arrow_ctg1 unplaced-scaffold na na WNMW01000031.1 <> na Primary Assembly 41427 na scaffold_104_arrow_ctg1 unplaced-scaffold na na WNMW01000032.1 <> na Primary Assembly 40169 na scaffold_105_arrow_ctg1 unplaced-scaffold na na WNMW01000033.1 <> na Primary Assembly 39988 na scaffold_106_arrow_ctg1 unplaced-scaffold na na WNMW01000034.1 <> na Primary Assembly 40097 na scaffold_107_arrow_ctg1 unplaced-scaffold na na WNMW01000035.1 <> na Primary Assembly 39030 na scaffold_108_arrow_ctg1 unplaced-scaffold na na WNMW01000036.1 <> na Primary Assembly 38606 na scaffold_109_arrow_ctg1 unplaced-scaffold na na WNMW01000037.1 <> na Primary Assembly 36381 na scaffold_110_arrow_ctg1 unplaced-scaffold na na WNMW01000038.1 <> na Primary Assembly 36152 na scaffold_111_arrow_ctg1 unplaced-scaffold na na WNMW01000039.1 <> na Primary Assembly 34048 na scaffold_112_arrow_ctg1 unplaced-scaffold na na WNMW01000040.1 <> na Primary Assembly 31801 na scaffold_113_arrow_ctg1 unplaced-scaffold na na WNMW01000041.1 <> na Primary Assembly 31856 na scaffold_114_arrow_ctg1 unplaced-scaffold na na WNMW01000042.1 <> na Primary Assembly 31213 na scaffold_115_arrow_ctg1 unplaced-scaffold na na WNMW01000043.1 <> na Primary Assembly 31018 na scaffold_116_arrow_ctg1 unplaced-scaffold na na WNMW01000044.1 <> na Primary Assembly 30494 na scaffold_117_arrow_ctg1 unplaced-scaffold na na WNMW01000045.1 <> na Primary Assembly 28114 na scaffold_118_arrow_ctg1 unplaced-scaffold na na WNMW01000046.1 <> na Primary Assembly 27681 na scaffold_119_arrow_ctg1 unplaced-scaffold na na WNMW01000047.1 <> na Primary Assembly 27421 na scaffold_120_arrow_ctg1 unplaced-scaffold na na WNMW01000048.1 <> na Primary Assembly 26392 na scaffold_121_arrow_ctg1 unplaced-scaffold na na WNMW01000049.1 <> na Primary Assembly 25642 na scaffold_122_arrow_ctg1 unplaced-scaffold na na WNMW01000050.1 <> na Primary Assembly 24736 na scaffold_123_arrow_ctg1 unplaced-scaffold na na WNMW01000051.1 <> na Primary Assembly 24299 na scaffold_124_arrow_ctg1 unplaced-scaffold na na WNMW01000052.1 <> na Primary Assembly 23777 na scaffold_125_arrow_ctg1 unplaced-scaffold na na WNMW01000053.1 <> na Primary Assembly 23140 na scaffold_126_arrow_ctg1 unplaced-scaffold na na WNMW01000054.1 <> na Primary Assembly 21775 na scaffold_127_arrow_ctg1 unplaced-scaffold na na WNMW01000055.1 <> na Primary Assembly 21731 na scaffold_128_arrow_ctg1 unplaced-scaffold na na WNMW01000056.1 <> na Primary Assembly 21323 na scaffold_129_arrow_ctg1 unplaced-scaffold na na WNMW01000057.1 <> na Primary Assembly 19834 na scaffold_130_arrow_ctg1 unplaced-scaffold na na WNMW01000058.1 <> na Primary Assembly 20189 na scaffold_131_arrow_ctg1 unplaced-scaffold na na WNMW01000059.1 <> na Primary Assembly 19182 na scaffold_132_arrow_ctg1 unplaced-scaffold na na WNMW01000060.1 <> na Primary Assembly 18371 na scaffold_133_arrow_ctg1 unplaced-scaffold na na WNMW01000061.1 <> na Primary Assembly 18089 na scaffold_134_arrow_ctg1 unplaced-scaffold na na WNMW01000062.1 <> na Primary Assembly 15140 na scaffold_135_arrow_ctg1 unplaced-scaffold na na WNMW01000063.1 <> na Primary Assembly 15201 na scaffold_136_arrow_ctg1 unplaced-scaffold na na WNMW01000064.1 <> na Primary Assembly 14555 na scaffold_137_arrow_ctg1 unplaced-scaffold na na WNMW01000065.1 <> na Primary Assembly 13413 na scaffold_138_arrow_ctg1 unplaced-scaffold na na WNMW01000066.1 <> na Primary Assembly 13375 na scaffold_139_arrow_ctg1 unplaced-scaffold na na WNMW01000067.1 <> na Primary Assembly 13298 na scaffold_140_arrow_ctg1 unplaced-scaffold na na WNMW01000068.1 <> na Primary Assembly 11040 na scaffold_141_arrow_ctg1 unplaced-scaffold na na WNMW01000069.1 <> na Primary Assembly 8980 na scaffold_142_arrow_ctg1 unplaced-scaffold na na WNMW01000070.1 <> na Primary Assembly 7466 na scaffold_143_arrow_ctg1 unplaced-scaffold na na WNMW01000071.1 <> na Primary Assembly 7062 na scaffold_144_arrow_ctg1 unplaced-scaffold na na WNMW01000072.1 <> na Primary Assembly 4976 na scaffold_145_arrow_ctg1 unplaced-scaffold na na WNMW01000073.1 <> na Primary Assembly 1840 na scaffold_146_arrow_ctg1 unplaced-scaffold na na WNMW01000074.1 <> na Primary Assembly 1681 na scaffold_147_arrow_ctg1 unplaced-scaffold na na WNMW01000075.1 <> na Primary Assembly 1608 na scaffold_39_arrow_ctg1 unplaced-scaffold na na WNMW01000076.1 <> na Primary Assembly 1005518 na scaffold_45_arrow_ctg1 unplaced-scaffold na na WNMW01000077.1 <> na Primary Assembly 572847 na scaffold_46_arrow_ctg1 unplaced-scaffold na na WNMW01000078.1 <> na Primary Assembly 458335 na scaffold_47_arrow_ctg1 unplaced-scaffold na na WNMW01000079.1 <> na Primary Assembly 378764 na scaffold_48_arrow_ctg1 unplaced-scaffold na na WNMW01000080.1 <> na Primary Assembly 163017 na scaffold_49_arrow_ctg1 unplaced-scaffold na na WNMW01000081.1 <> na Primary Assembly 325351 na scaffold_50_arrow_ctg1 unplaced-scaffold na na WNMW01000082.1 <> na Primary Assembly 285901 na scaffold_52_arrow_ctg1 unplaced-scaffold na na WNMW01000083.1 <> na Primary Assembly 275780 na scaffold_53_arrow_ctg1 unplaced-scaffold na na WNMW01000084.1 <> na Primary Assembly 266475 na scaffold_54_arrow_ctg1 unplaced-scaffold na na WNMW01000085.1 <> na Primary Assembly 258709 na scaffold_57_arrow_ctg1 unplaced-scaffold na na WNMW01000086.1 <> na Primary Assembly 222045 na scaffold_58_arrow_ctg1 unplaced-scaffold na na WNMW01000087.1 <> na Primary Assembly 215160 na scaffold_59_arrow_ctg1 unplaced-scaffold na na WNMW01000088.1 <> na Primary Assembly 210225 na scaffold_61_arrow_ctg1 unplaced-scaffold na na WNMW01000089.1 <> na Primary Assembly 204602 na scaffold_62_arrow_ctg1 unplaced-scaffold na na WNMW01000090.1 <> na Primary Assembly 199985 na scaffold_63_arrow_ctg1 unplaced-scaffold na na WNMW01000091.1 <> na Primary Assembly 194324 na scaffold_65_arrow_ctg1 unplaced-scaffold na na WNMW01000092.1 <> na Primary Assembly 163912 na scaffold_66_arrow_ctg1 unplaced-scaffold na na WNMW01000093.1 <> na Primary Assembly 150259 na scaffold_67_arrow_ctg1 unplaced-scaffold na na WNMW01000094.1 <> na Primary Assembly 148060 na scaffold_68_arrow_ctg1 unplaced-scaffold na na WNMW01000095.1 <> na Primary Assembly 145916 na scaffold_69_arrow_ctg1 unplaced-scaffold na na WNMW01000096.1 <> na Primary Assembly 142147 na scaffold_70_arrow_ctg1 unplaced-scaffold na na WNMW01000097.1 <> na Primary Assembly 138854 na scaffold_71_arrow_ctg1 unplaced-scaffold na na WNMW01000098.1 <> na Primary Assembly 129983 na scaffold_72_arrow_ctg1 unplaced-scaffold na na WNMW01000099.1 <> na Primary Assembly 127573 na scaffold_74_arrow_ctg1 unplaced-scaffold na na WNMW01000100.1 <> na Primary Assembly 112569 na scaffold_75_arrow_ctg1 unplaced-scaffold na na WNMW01000101.1 <> na Primary Assembly 105786 na scaffold_76_arrow_ctg1 unplaced-scaffold na na WNMW01000102.1 <> na Primary Assembly 98906 na scaffold_77_arrow_ctg1 unplaced-scaffold na na WNMW01000103.1 <> na Primary Assembly 93085 na scaffold_79_arrow_ctg1 unplaced-scaffold na na WNMW01000104.1 <> na Primary Assembly 84563 na scaffold_80_arrow_ctg1 unplaced-scaffold na na WNMW01000105.1 <> na Primary Assembly 81411 na scaffold_81_arrow_ctg1 unplaced-scaffold na na WNMW01000106.1 <> na Primary Assembly 78245 na scaffold_82_arrow_ctg1 unplaced-scaffold na na WNMW01000107.1 <> na Primary Assembly 77572 na scaffold_83_arrow_ctg1 unplaced-scaffold na na WNMW01000108.1 <> na Primary Assembly 76627 na scaffold_85_arrow_ctg1 unplaced-scaffold na na WNMW01000109.1 <> na Primary Assembly 68970 na scaffold_86_arrow_ctg1 unplaced-scaffold na na WNMW01000110.1 <> na Primary Assembly 68804 na scaffold_87_arrow_ctg1 unplaced-scaffold na na WNMW01000111.1 <> na Primary Assembly 68215 na scaffold_89_arrow_ctg1 unplaced-scaffold na na WNMW01000112.1 <> na Primary Assembly 67062 na scaffold_90_arrow_ctg1 unplaced-scaffold na na WNMW01000113.1 <> na Primary Assembly 65107 na scaffold_91_arrow_ctg1 unplaced-scaffold na na WNMW01000114.1 <> na Primary Assembly 64552 na scaffold_92_arrow_ctg1 unplaced-scaffold na na WNMW01000115.1 <> na Primary Assembly 60389 na scaffold_93_arrow_ctg1 unplaced-scaffold na na WNMW01000116.1 <> na Primary Assembly 56280 na scaffold_94_arrow_ctg1 unplaced-scaffold na na WNMW01000117.1 <> na Primary Assembly 48778 na scaffold_95_arrow_ctg1 unplaced-scaffold na na WNMW01000118.1 <> na Primary Assembly 48206 na scaffold_96_arrow_ctg1 unplaced-scaffold na na WNMW01000119.1 <> na Primary Assembly 47797 na scaffold_97_arrow_ctg1 unplaced-scaffold na na WNMW01000120.1 <> na Primary Assembly 46579 na scaffold_98_arrow_ctg1 unplaced-scaffold na na WNMW01000121.1 <> na Primary Assembly 45965 na scaffold_99_arrow_ctg1 unplaced-scaffold na na WNMW01000122.1 <> na Primary Assembly 46470 na bSteHir1_MT assembled-molecule MT Mitochondrion CM020500.1 <> na non-nuclear 19053 na