# Assembly name: PvSY56_v1 # Organism name: Plasmodium vivax (malaria parasite P. vivax) # Infraspecific name: strain=PvSY56 # Taxid: 5855 # BioSample: SAMN09324542 # BioProject: PRJNA474492 # Submitter: University of Pennsylvania # Date: 2018-08-17 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: QMFC01 # Assembly method: Geneious v. 9; BEDtools v. 2.18; SPAdes v. 3.9.0; smalt v. 0.7.6; SAMtools v. 1.3.1; igvtools v. 2.3.72; IMAGE v. 2.4; proovread v. 2.13.13; FGAP v. 1.8.1; Gapfiller v. 1.10; BLASR v. 5.3.8; ABACAS v. 1.3.2; iCORN v. 2 # Expected final version: yes # Reference guided assembly: GCA_900093555.1 # Genome coverage: 320x # Sequencing technology: Illumina MiSeq and PacBio # GenBank assembly accession: GCA_003402215.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_003402225.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name PvSY56_01 unplaced-scaffold na na QMFC01000001.1 <> na Primary Assembly 932095 na PvSY56_02 unplaced-scaffold na na QMFC01000002.1 <> na Primary Assembly 890168 na PvSY56_03 unplaced-scaffold na na QMFC01000003.1 <> na Primary Assembly 862682 na PvSY56_04 unplaced-scaffold na na QMFC01000004.1 <> na Primary Assembly 898952 na PvSY56_05 unplaced-scaffold na na QMFC01000005.1 <> na Primary Assembly 1448426 na PvSY56_06 unplaced-scaffold na na QMFC01000006.1 <> na Primary Assembly 1051663 na PvSY56_07 unplaced-scaffold na na QMFC01000007.1 <> na Primary Assembly 1686021 na PvSY56_08 unplaced-scaffold na na QMFC01000008.1 <> na Primary Assembly 1798630 na PvSY56_09 unplaced-scaffold na na QMFC01000009.1 <> na Primary Assembly 2114241 na PvSY56_10 unplaced-scaffold na na QMFC01000010.1 <> na Primary Assembly 1527722 na PvSY56_11 unplaced-scaffold na na QMFC01000011.1 <> na Primary Assembly 2117146 na PvSY56_12 unplaced-scaffold na na QMFC01000012.1 <> na Primary Assembly 3187015 na PvSY56_13 unplaced-scaffold na na QMFC01000013.1 <> na Primary Assembly 2093923 na PvSY56_14 unplaced-scaffold na na QMFC01000014.1 <> na Primary Assembly 3170047 na