RepeatModeler Version 2.0.4
===========================
Using output directory = /dev/shm/rModeler.sKYcHT/RM_365577.ThuSep120845222024
Search Engine = rmblast 2.13.0+
Threads = 32
Dependencies: TRF 4.09, RECON , RepeatScout 1.0.6, RepeatMasker 4.1.4
LTR Structural Analysis: Disabled [use -LTRStruct to enable]
Random Number Seed: 1726155922
Database = /dev/shm/rModeler.sKYcHT/GCA_003072535.4_EMAI_ToriGNu_1   - Sequences = 6
  - Bases = 9064305
Storage Throughput = good ( 779.44 MB/s )


RepeatModeler Round # 1
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 40000000 bp
   - Final Sample Size = 9064180 bp ( 9064180 non ambiguous )
   - Num Contigs Represented = 6
   - Sequence extraction : 00:00:02 (hh:mm:ss) Elapsed Time
 -- Running RepeatScout on the sequences...
   - RepeatScout: 00:03:08 (hh:mm:ss) Elapsed Time
Round Time: 00:05:14 (hh:mm:ss) Elapsed Time : 12 families discovered.


RepeatModeler Round # 2
========================
Searching for Repeats
 -- Sampling from the database...
   - Gathering up to 10000000 bp
   - Sequence extraction : 00:00:02 (hh:mm:ss) Elapsed Time
 -- Running TRFMask on the sequence...
   - TRFMask time 00:00:26 (hh:mm:ss) Elapsed Time
 -- Masking repeats from the previous rounds...
       399 repeats masked totaling 244886 bp(s).
   - TE Masking time 00:00:03 (hh:mm:ss) Elapsed Time
 -- Sample Stats:
       Sample Size 9064180 bp
       Num Contigs Represented = 6
       Non ambiguous bp:
             Initial: 9064180 bp
             After Masking: 8775690 bp
             Masked: 3.18 % 
 -- Input Database Coverage: 9064180 bp out of 9064305 bp ( 100.00 % )
Sampling Time: 00:00:32 (hh:mm:ss) Elapsed Time
Running all-by-other comparisons...
  - Total Comparisons = 26106
Comparison Time: 00:08:27 (hh:mm:ss) Elapsed Time, 3570 HSPs Collected
Number of families returned by RECON: 552
Round Time: 00:09:13 (hh:mm:ss) Elapsed Time : 3 families discovered.

RepeatScout/RECON discovery complete: 15 families found


Classification Time: 00:00:45 (hh:mm:ss) Elapsed Time


Program Time: 00:15:12 (hh:mm:ss) Elapsed Time