track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.assembly.bb type bigBed 6 html html/GCA_001949185.1_Rvar_4.0.assembly searchIndex name searchTrix ixIxx/GCA_001949185.1_Rvar_4.0.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.gc5Base.bw html html/GCA_001949185.1_Rvar_4.0.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCA_001949185.1_Rvar_4.0.tanDups track gapOverlap parent tanDups on shortLabel Gap Overlaps longLabel Paired exactly identical sequence on each side of a gap bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.gapOverlap.bb type bigBed 12 track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.tandemDups.bb type bigBed 12 track repeatMasker shortLabel RepeatMasker longLabel RepeatMasker Repetitive Elements type bigRmsk 9 + visibility pack group varRep bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.rmsk.bb maxWindowToDraw 5000000 html html/GCA_001949185.1_Rvar_4.0.repeatMasker track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.simpleRepeat.bb html html/GCA_001949185.1_Rvar_4.0.simpleRepeat track ncbiGene longLabel Gene models submitted to NCBI shortLabel Gene models visibility pack color 0,80,150 altColor 150,80,0 colorByStrand 0,80,150 150,80,0 bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.ncbiGene.bb type bigGenePred html html/GCA_001949185.1_Rvar_4.0.ncbiGene searchIndex name searchTrix ixIxx/GCA_001949185.1_Rvar_4.0.ncbiGene.ix url https://www.ncbi.nlm.nih.gov/gene/?term=$$ urlLabel Entrez gene labelFields geneName,geneName2 defaultLabelFields geneName2 group genes track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bigBed 4 + html html/GCA_001949185.1_Rvar_4.0.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.windowMasker.bb html html/GCA_001949185.1_Rvar_4.0.windowMasker track allGaps shortLabel All Gaps longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps group map visibility dense type bigBed 3 bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.allGaps.bb html html/GCA_001949185.1_Rvar_4.0.allGaps track augustus shortLabel Augustus longLabel Augustus Gene Predictions group genes visibility dense color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.augustus.bb html html/GCA_001949185.1_Rvar_4.0.augustus track xenoRefGene shortLabel RefSeq mRNAs longLabel RefSeq mRNAs mapped to this assembly group rna visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.xenoRefGene.bb labelFields name,geneName,geneName2 defaultLabelFields geneName searchIndex name searchTrix ixIxx/GCA_001949185.1_Rvar_4.0.xenoRefGene.ix html html/GCA_001949185.1_Rvar_4.0.xenoRefGene ############################################################################## # GCA_002082055.1 - tardigrades - Ramazzottius varieornatus - taxId: 947166 ############################################################################## track chainNetGCA_002082055.1 compositeTrack on shortLabel tardigrades Chain/Net longLabel tardigrades (2016-11-09), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno priority 100.1 color 0,0,0 altColor 100,50,0 type bed 3 sortOrder view=+ otherDb GCA_002082055.1 html html/GCA_001949185.1_Rvar_4.0.chainNet track chainNetGCA_002082055.1Viewchain shortLabel Chain view chain visibility pack parent chainNetGCA_002082055.1 spectrum on track chainGCA_002082055.1 parent chainNetGCA_002082055.1Viewchain subGroups view=chain shortLabel tardigrades Chain longLabel tardigrades (2016-11-09) Chained Alignments type bigChain GCA_002082055.1 bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.chainGCA_002082055.1.bb linkDataUrl bbi/GCA_001949185.1_Rvar_4.0.chainGCA_002082055.1Link.bb priority 1 track chainSynGCA_002082055.1 parent chainNetGCA_002082055.1Viewchain subGroups view=chain shortLabel tardigrades synChain longLabel tardigrades (2016-11-09) Syntenic Chained Alignments type bigChain GCA_002082055.1 bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.chainSynGCA_002082055.1.bb linkDataUrl bbi/GCA_001949185.1_Rvar_4.0.chainSynGCA_002082055.1Link.bb priority 2 track chainRBestGCA_002082055.1 parent chainNetGCA_002082055.1Viewchain subGroups view=chain shortLabel tardigrades rbChain longLabel tardigrades (2016-11-09) Reciprocal Best Chained Alignments type bigChain GCA_002082055.1 bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.chainRBestGCA_002082055.1.bb linkDataUrl bbi/GCA_001949185.1_Rvar_4.0.chainRBestGCA_002082055.1Link.bb priority 3 track chainLiftOverGCA_002082055.1 parent chainNetGCA_002082055.1Viewchain subGroups view=chain shortLabel tardigrades loChain longLabel tardigrades (2016-11-09) Lift Over Chained Alignments type bigChain GCA_002082055.1 bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.chainLiftOverGCA_002082055.1.bb linkDataUrl bbi/GCA_001949185.1_Rvar_4.0.chainLiftOverGCA_002082055.1Link.bb priority 4 track mafNetGCA_002082055.1Viewnet shortLabel Net view net visibility full parent chainNetGCA_002082055.1 track netGCA_002082055.1 parent mafNetGCA_002082055.1Viewnet subGroups view=net shortLabel tardigrades net longLabel tardigrades (2016-11-09) Net Alignment type bigMaf bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.GCA_002082055.1.net.bb summary bbi/GCA_001949185.1_Rvar_4.0.GCA_002082055.1.net.summary.bb speciesOrder GCA_002082055.1 priority 5 track synNetGCA_002082055.1 parent mafNetGCA_002082055.1Viewnet subGroups view=net shortLabel tardigrades synNet longLabel tardigrades (2016-11-09) Syntenic Net Alignment type bigMaf bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.GCA_002082055.1.synNet.bb summary bbi/GCA_001949185.1_Rvar_4.0.GCA_002082055.1.synNet.summary.bb speciesOrder GCA_002082055.1 priority 6 track rbestNetGCA_002082055.1 parent mafNetGCA_002082055.1Viewnet subGroups view=net shortLabel tardigrades rbestNet longLabel tardigrades (2016-11-09) Reciprocal Best Net Alignment type bigMaf bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.GCA_002082055.1.rbestNet.bb summary bbi/GCA_001949185.1_Rvar_4.0.GCA_002082055.1.rbestNet.summary.bb speciesOrder GCA_002082055.1 priority 7 track liftOverNetGCA_002082055.1 parent mafNetGCA_002082055.1Viewnet subGroups view=net shortLabel tardigrades liftOverNet longLabel tardigrades (2016-11-09) Lift Over Net Alignment type bigMaf bigDataUrl bbi/GCA_001949185.1_Rvar_4.0.GCA_002082055.1.liftOverNet.bb summary bbi/GCA_001949185.1_Rvar_4.0.GCA_002082055.1.liftOverNet.summary.bb speciesOrder GCA_002082055.1 priority 8