# Assembly name: CryHomUKH1-1.0 # Description: Cryptosporidium hominis UKH1 1.0 # Organism name: Cryptosporidium hominis (apicomplexans) # Infraspecific name: strain=UKH1 # Taxid: 237895 # BioSample: SAMN02382004 # BioProject: PRJNA222837 # Submitter: IGS # Date: 2016-03-17 # Assembly type: haploid # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JIBN01 # Assembly method: MaSuRCA v. 1.9.2 # Expected final version: yes # Genome coverage: 32.59x # Sequencing technology: Illumina MiSeq # GenBank assembly accession: GCA_001593475.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_001593515.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name ctg7180000000282_1 unplaced-scaffold na na JIBN01000001.1 <> na Primary Assembly 245088 na ctg7180000000283_1 unplaced-scaffold na na JIBN01000002.1 <> na Primary Assembly 2047 na ctg7180000000284_1 unplaced-scaffold na na JIBN01000003.1 <> na Primary Assembly 2026 na ctg7180000000285_1 unplaced-scaffold na na JIBN01000004.1 <> na Primary Assembly 85532 na ctg7180000000286_1 unplaced-scaffold na na JIBN01000005.1 <> na Primary Assembly 3240 na ctg7180000000287_1 unplaced-scaffold na na JIBN01000006.1 <> na Primary Assembly 22682 na ctg7180000000288_1 unplaced-scaffold na na JIBN01000007.1 <> na Primary Assembly 125556 na ctg7180000000289_1 unplaced-scaffold na na JIBN01000008.1 <> na Primary Assembly 112394 na ctg7180000000290_1 unplaced-scaffold na na JIBN01000009.1 <> na Primary Assembly 2603 na ctg7180000000292_1 unplaced-scaffold na na JIBN01000010.1 <> na Primary Assembly 2027 na ctg7180000000293_1 unplaced-scaffold na na JIBN01000011.1 <> na Primary Assembly 24763 na ctg7180000000295_1 unplaced-scaffold na na JIBN01000012.1 <> na Primary Assembly 2047 na ctg7180000000296_1 unplaced-scaffold na na JIBN01000013.1 <> na Primary Assembly 1461 na ctg7180000000297_1 unplaced-scaffold na na JIBN01000014.1 <> na Primary Assembly 105558 na ctg7180000000298_1 unplaced-scaffold na na JIBN01000015.1 <> na Primary Assembly 98471 na ctg7180000000299_1 unplaced-scaffold na na JIBN01000016.1 <> na Primary Assembly 2132 na ctg7180000000300_1 unplaced-scaffold na na JIBN01000017.1 <> na Primary Assembly 102669 na ctg7180000000301_1 unplaced-scaffold na na JIBN01000018.1 <> na Primary Assembly 98628 na ctg7180000000302_1 unplaced-scaffold na na JIBN01000019.1 <> na Primary Assembly 984 na ctg7180000000303_1 unplaced-scaffold na na JIBN01000020.1 <> na Primary Assembly 637 na ctg7180000000304_1 unplaced-scaffold na na JIBN01000021.1 <> na Primary Assembly 2553 na ctg7180000000305_1 unplaced-scaffold na na JIBN01000022.1 <> na Primary Assembly 1242 na ctg7180000000306_1 unplaced-scaffold na na JIBN01000023.1 <> na Primary Assembly 72756 na ctg7180000000308_1 unplaced-scaffold na na JIBN01000024.1 <> na Primary Assembly 65323 na ctg7180000000309_1 unplaced-scaffold na na JIBN01000025.1 <> na Primary Assembly 1164 na ctg7180000000311_1 unplaced-scaffold na na JIBN01000026.1 <> na Primary Assembly 21333 na ctg7180000000312_1 unplaced-scaffold na na JIBN01000027.1 <> na Primary Assembly 1317 na ctg7180000000313_1 unplaced-scaffold na na JIBN01000028.1 <> na Primary Assembly 375 na ctg7180000000314_1 unplaced-scaffold na na JIBN01000029.1 <> na Primary Assembly 57919 na ctg7180000000315_1 unplaced-scaffold na na JIBN01000030.1 <> na Primary Assembly 32694 na ctg7180000000316_1 unplaced-scaffold na na JIBN01000031.1 <> na Primary Assembly 60375 na ctg7180000000317_1 unplaced-scaffold na na JIBN01000032.1 <> na Primary Assembly 2047 na ctg7180000000318_1 unplaced-scaffold na na JIBN01000033.1 <> na Primary Assembly 1690 na ctg7180000000319_1 unplaced-scaffold na na JIBN01000034.1 <> na Primary Assembly 302 na ctg7180000000320_1 unplaced-scaffold na na JIBN01000035.1 <> na Primary Assembly 45123 na ctg7180000000321_1 unplaced-scaffold na na JIBN01000036.1 <> na Primary Assembly 3417 na ctg7180000000322_1 unplaced-scaffold na na JIBN01000037.1 <> na Primary Assembly 2276 na ctg7180000000323_1 unplaced-scaffold na na JIBN01000038.1 <> na Primary Assembly 5100 na ctg7180000000324_1 unplaced-scaffold na na JIBN01000039.1 <> na Primary Assembly 3087 na ctg7180000000325_1 unplaced-scaffold na na JIBN01000040.1 <> na Primary Assembly 541 na ctg7180000000326_1 unplaced-scaffold na na JIBN01000041.1 <> na Primary Assembly 1112 na ctg7180000000327_1 unplaced-scaffold na na JIBN01000042.1 <> na Primary Assembly 35616 na ctg7180000000328_1 unplaced-scaffold na na JIBN01000043.1 <> na Primary Assembly 4319 na ctg7180000000329_1 unplaced-scaffold na na JIBN01000044.1 <> na Primary Assembly 1848 na ctg7180000000330_1 unplaced-scaffold na na JIBN01000045.1 <> na Primary Assembly 23929 na ctg7180000000331_1 unplaced-scaffold na na JIBN01000046.1 <> na Primary Assembly 2047 na ctg7180000000332_1 unplaced-scaffold na na JIBN01000047.1 <> na Primary Assembly 2130 na ctg7180000000333_1 unplaced-scaffold na na JIBN01000048.1 <> na Primary Assembly 23349 na ctg7180000000334_1 unplaced-scaffold na na JIBN01000049.1 <> na Primary Assembly 16829 na ctg7180000000335_1 unplaced-scaffold na na JIBN01000050.1 <> na Primary Assembly 18511 na ctg7180000000337_1 unplaced-scaffold na na JIBN01000051.1 <> na Primary Assembly 14630 na ctg7180000000338_1 unplaced-scaffold na na JIBN01000052.1 <> na Primary Assembly 3490 na ctg7180000000339_1 unplaced-scaffold na na JIBN01000053.1 <> na Primary Assembly 380 na ctg7180000000341_1 unplaced-scaffold na na JIBN01000054.1 <> na Primary Assembly 2161 na ctg7180000000342_1 unplaced-scaffold na na JIBN01000055.1 <> na Primary Assembly 8943 na ctg7180000000344_1 unplaced-scaffold na na JIBN01000056.1 <> na Primary Assembly 1719 na ctg7180000000345_1 unplaced-scaffold na na JIBN01000057.1 <> na Primary Assembly 892 na ctg7180000000346_1 unplaced-scaffold na na JIBN01000058.1 <> na Primary Assembly 509 na ctg7180000000347_1 unplaced-scaffold na na JIBN01000059.1 <> na Primary Assembly 818 na ctg7180000000348_1 unplaced-scaffold na na JIBN01000060.1 <> na Primary Assembly 14369 na ctg7180000000350_1 unplaced-scaffold na na JIBN01000061.1 <> na Primary Assembly 824 na ctg7180000000351_1 unplaced-scaffold na na JIBN01000062.1 <> na Primary Assembly 2747 na ctg7180000000352_1 unplaced-scaffold na na JIBN01000063.1 <> na Primary Assembly 10102 na ctg7180000000353_1 unplaced-scaffold na na JIBN01000064.1 <> na Primary Assembly 9253 na ctg7180000000354_1 unplaced-scaffold na na JIBN01000065.1 <> na Primary Assembly 345 na ctg7180000000355_1 unplaced-scaffold na na JIBN01000066.1 <> na Primary Assembly 9185 na ctg7180000000356_1 unplaced-scaffold na na JIBN01000067.1 <> na Primary Assembly 1628 na ctg7180000000357_1 unplaced-scaffold na na JIBN01000068.1 <> na Primary Assembly 9737 na ctg7180000000358_1 unplaced-scaffold na na JIBN01000069.1 <> na Primary Assembly 2138 na ctg7180000000360_1 unplaced-scaffold na na JIBN01000070.1 <> na Primary Assembly 6901 na ctg7180000000361_1 unplaced-scaffold na na JIBN01000071.1 <> na Primary Assembly 1682 na ctg7180000000362_1 unplaced-scaffold na na JIBN01000072.1 <> na Primary Assembly 7388 na ctg7180000000363_1 unplaced-scaffold na na JIBN01000073.1 <> na Primary Assembly 3962 na ctg7180000000365_1 unplaced-scaffold na na JIBN01000074.1 <> na Primary Assembly 802 na ctg7180000000366_1 unplaced-scaffold na na JIBN01000075.1 <> na Primary Assembly 1523 na ctg7180000000368_1 unplaced-scaffold na na JIBN01000076.1 <> na Primary Assembly 496 na ctg7180000000369_1 unplaced-scaffold na na JIBN01000077.1 <> na Primary Assembly 396 na ctg7180000000370_1 unplaced-scaffold na na JIBN01000078.1 <> na Primary Assembly 1620 na ctg7180000000371_1 unplaced-scaffold na na JIBN01000079.1 <> na Primary Assembly 875 na ctg7180000000372_1 unplaced-scaffold na na JIBN01000080.1 <> na Primary Assembly 722 na ctg7180000000373_1 unplaced-scaffold na na JIBN01000081.1 <> na Primary Assembly 482 na ctg7180000000374_1 unplaced-scaffold na na JIBN01000082.1 <> na Primary Assembly 885 na ctg7180000000376_1 unplaced-scaffold na na JIBN01000083.1 <> na Primary Assembly 8253 na ctg7180000000377_1 unplaced-scaffold na na JIBN01000084.1 <> na Primary Assembly 918 na ctg7180000000378_1 unplaced-scaffold na na JIBN01000085.1 <> na Primary Assembly 802 na ctg7180000000379_1 unplaced-scaffold na na JIBN01000086.1 <> na Primary Assembly 953 na ctg7180000000380_1 unplaced-scaffold na na JIBN01000087.1 <> na Primary Assembly 2389 na ctg7180000000381_1 unplaced-scaffold na na JIBN01000088.1 <> na Primary Assembly 34159 na ctg7180000000382_1 unplaced-scaffold na na JIBN01000089.1 <> na Primary Assembly 192647 na ctg7180000000383_1 unplaced-scaffold na na JIBN01000090.1 <> na Primary Assembly 678 na ctg7180000000384_1 unplaced-scaffold na na JIBN01000091.1 <> na Primary Assembly 99743 na ctg7180000000385_1 unplaced-scaffold na na JIBN01000092.1 <> na Primary Assembly 41427 na ctg7180000000386_1 unplaced-scaffold na na JIBN01000093.1 <> na Primary Assembly 128854 na ctg7180000000387_1 unplaced-scaffold na na JIBN01000094.1 <> na Primary Assembly 103111 na ctg7180000000388_1 unplaced-scaffold na na JIBN01000095.1 <> na Primary Assembly 114608 na ctg7180000000390_1 unplaced-scaffold na na JIBN01000096.1 <> na Primary Assembly 77034 na ctg7180000000391_1 unplaced-scaffold na na JIBN01000097.1 <> na Primary Assembly 1569 na ctg7180000000392_1 unplaced-scaffold na na JIBN01000098.1 <> na Primary Assembly 46965 na ctg7180000000393_1 unplaced-scaffold na na JIBN01000099.1 <> na Primary Assembly 784 na ctg7180000000395_1 unplaced-scaffold na na JIBN01000100.1 <> na Primary Assembly 7351 na ctg7180000000396_1 unplaced-scaffold na na JIBN01000101.1 <> na Primary Assembly 7460 na ctg7180000000398_1 unplaced-scaffold na na JIBN01000102.1 <> na Primary Assembly 4530 na ctg7180000000400_1 unplaced-scaffold na na JIBN01000103.1 <> na Primary Assembly 2283 na ctg7180000000401_1 unplaced-scaffold na na JIBN01000104.1 <> na Primary Assembly 1284 na ctg7180000000402_1 unplaced-scaffold na na JIBN01000105.1 <> na Primary Assembly 354 na ctg7180000000403_1 unplaced-scaffold na na JIBN01000106.1 <> na Primary Assembly 5471 na ctg7180000000404_1 unplaced-scaffold na na JIBN01000107.1 <> na Primary Assembly 88977 na ctg7180000000405_1 unplaced-scaffold na na JIBN01000108.1 <> na Primary Assembly 12290 na ctg7180000000406_1 unplaced-scaffold na na JIBN01000109.1 <> na Primary Assembly 144160 na ctg7180000000407_1 unplaced-scaffold na na JIBN01000110.1 <> na Primary Assembly 133122 na ctg7180000000408_1 unplaced-scaffold na na JIBN01000111.1 <> na Primary Assembly 126848 na ctg7180000000409_1 unplaced-scaffold na na JIBN01000112.1 <> na Primary Assembly 114061 na ctg7180000000410_1 unplaced-scaffold na na JIBN01000113.1 <> na Primary Assembly 92379 na ctg7180000000411_1 unplaced-scaffold na na JIBN01000114.1 <> na Primary Assembly 78297 na ctg7180000000412_1 unplaced-scaffold na na JIBN01000115.1 <> na Primary Assembly 35170 na ctg7180000000413_1 unplaced-scaffold na na JIBN01000116.1 <> na Primary Assembly 2119 na ctg7180000000414_1 unplaced-scaffold na na JIBN01000117.1 <> na Primary Assembly 27407 na ctg7180000000415_1 unplaced-scaffold na na JIBN01000118.1 <> na Primary Assembly 110374 na ctg7180000000416_1 unplaced-scaffold na na JIBN01000119.1 <> na Primary Assembly 29087 na ctg7180000000417_1 unplaced-scaffold na na JIBN01000120.1 <> na Primary Assembly 1460 na ctg7180000000418_1 unplaced-scaffold na na JIBN01000121.1 <> na Primary Assembly 409 na ctg7180000000419_1 unplaced-scaffold na na JIBN01000122.1 <> na Primary Assembly 207015 na ctg7180000000420_1 unplaced-scaffold na na JIBN01000123.1 <> na Primary Assembly 193763 na ctg7180000000421_1 unplaced-scaffold na na JIBN01000124.1 <> na Primary Assembly 179408 na ctg7180000000422_1 unplaced-scaffold na na JIBN01000125.1 <> na Primary Assembly 172042 na ctg7180000000423_1 unplaced-scaffold na na JIBN01000126.1 <> na Primary Assembly 160534 na ctg7180000000424_1 unplaced-scaffold na na JIBN01000127.1 <> na Primary Assembly 123656 na ctg7180000000425_1 unplaced-scaffold na na JIBN01000128.1 <> na Primary Assembly 79529 na ctg7180000000426_1 unplaced-scaffold na na JIBN01000129.1 <> na Primary Assembly 61577 na ctg7180000000427_1 unplaced-scaffold na na JIBN01000130.1 <> na Primary Assembly 58521 na ctg7180000000428_1 unplaced-scaffold na na JIBN01000131.1 <> na Primary Assembly 3903 na ctg7180000000429_1 unplaced-scaffold na na JIBN01000132.1 <> na Primary Assembly 2378 na ctg7180000000430_1 unplaced-scaffold na na JIBN01000133.1 <> na Primary Assembly 670 na ctg7180000000431_1 unplaced-scaffold na na JIBN01000134.1 <> na Primary Assembly 9256 na ctg7180000000432_1 unplaced-scaffold na na JIBN01000135.1 <> na Primary Assembly 258272 na ctg7180000000433_1 unplaced-scaffold na na JIBN01000136.1 <> na Primary Assembly 46637 na ctg7180000000434_1 unplaced-scaffold na na JIBN01000137.1 <> na Primary Assembly 24833 na ctg7180000000435_1 unplaced-scaffold na na JIBN01000138.1 <> na Primary Assembly 297597 na ctg7180000000436_1 unplaced-scaffold na na JIBN01000139.1 <> na Primary Assembly 542781 na ctg7180000000437_1 unplaced-scaffold na na JIBN01000140.1 <> na Primary Assembly 328407 na ctg7180000000438_1 unplaced-scaffold na na JIBN01000141.1 <> na Primary Assembly 287459 na ctg7180000000439_1 unplaced-scaffold na na JIBN01000142.1 <> na Primary Assembly 260029 na ctg7180000000440_1 unplaced-scaffold na na JIBN01000143.1 <> na Primary Assembly 253651 na ctg7180000000441_1 unplaced-scaffold na na JIBN01000144.1 <> na Primary Assembly 241469 na ctg7180000000442_1 unplaced-scaffold na na JIBN01000145.1 <> na Primary Assembly 249124 na ctg7180000000443_1 unplaced-scaffold na na JIBN01000146.1 <> na Primary Assembly 208194 na ctg7180000000444_1 unplaced-scaffold na na JIBN01000147.1 <> na Primary Assembly 201801 na ctg7180000000445_1 unplaced-scaffold na na JIBN01000148.1 <> na Primary Assembly 111696 na ctg7180000000446_1 unplaced-scaffold na na JIBN01000149.1 <> na Primary Assembly 101380 na ctg7180000000447_1 unplaced-scaffold na na JIBN01000150.1 <> na Primary Assembly 91231 na ctg7180000000448_1 unplaced-scaffold na na JIBN01000151.1 <> na Primary Assembly 91942 na ctg7180000000449_1 unplaced-scaffold na na JIBN01000152.1 <> na Primary Assembly 4282 na ctg7180000000450_1 unplaced-scaffold na na JIBN01000153.1 <> na Primary Assembly 380987 na ctg7180000000451_1 unplaced-scaffold na na JIBN01000154.1 <> na Primary Assembly 198361 na ctg7180000000452_1 unplaced-scaffold na na JIBN01000155.1 <> na Primary Assembly 121568 na ctg7180000000453_1 unplaced-scaffold na na JIBN01000156.1 <> na Primary Assembly 49878 na