# Assembly name: CryBaiTAMU-09Q1-1.0 # Description: Cryptosporidium baileyi TAMU-09Q1 1.0 # Organism name: Cryptosporidium baileyi (apicomplexans) # Infraspecific name: strain=TAMU-09Q1 # Taxid: 27987 # BioSample: SAMN02382006 # BioProject: PRJNA222835 # Submitter: IGS # Date: 2016-03-17 # Assembly type: haploid # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: JIBL01 # Assembly method: MaSuRCA v. 1.9.2 # Expected final version: yes # Genome coverage: 70.06x # Sequencing technology: Illumina MiSeq # RefSeq category: Reference Genome # GenBank assembly accession: GCA_001593455.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_001593495.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name ctg7180000000537_1 unplaced-scaffold na na JIBL01000001.1 <> na Primary Assembly 145259 na ctg7180000000538_1 unplaced-scaffold na na JIBL01000002.1 <> na Primary Assembly 86524 na ctg7180000000539_1 unplaced-scaffold na na JIBL01000003.1 <> na Primary Assembly 17489 na ctg7180000000540_1 unplaced-scaffold na na JIBL01000004.1 <> na Primary Assembly 19822 na ctg7180000000541_1 unplaced-scaffold na na JIBL01000005.1 <> na Primary Assembly 15216 na ctg7180000000542_1 unplaced-scaffold na na JIBL01000006.1 <> na Primary Assembly 13325 na ctg7180000000543_1 unplaced-scaffold na na JIBL01000007.1 <> na Primary Assembly 14911 na ctg7180000000544_1 unplaced-scaffold na na JIBL01000008.1 <> na Primary Assembly 8877 na ctg7180000000545_1 unplaced-scaffold na na JIBL01000009.1 <> na Primary Assembly 10079 na ctg7180000000546_1 unplaced-scaffold na na JIBL01000010.1 <> na Primary Assembly 5610 na ctg7180000000547_1 unplaced-scaffold na na JIBL01000011.1 <> na Primary Assembly 7880 na ctg7180000000548_1 unplaced-scaffold na na JIBL01000012.1 <> na Primary Assembly 6399 na ctg7180000000549_1 unplaced-scaffold na na JIBL01000013.1 <> na Primary Assembly 8813 na ctg7180000000550_1 unplaced-scaffold na na JIBL01000014.1 <> na Primary Assembly 6214 na ctg7180000000551_1 unplaced-scaffold na na JIBL01000015.1 <> na Primary Assembly 7026 na ctg7180000000552_1 unplaced-scaffold na na JIBL01000016.1 <> na Primary Assembly 5270 na ctg7180000000553_1 unplaced-scaffold na na JIBL01000017.1 <> na Primary Assembly 4347 na ctg7180000000554_1 unplaced-scaffold na na JIBL01000018.1 <> na Primary Assembly 2640 na ctg7180000000556_1 unplaced-scaffold na na JIBL01000019.1 <> na Primary Assembly 6405 na ctg7180000000557_1 unplaced-scaffold na na JIBL01000020.1 <> na Primary Assembly 2072 na ctg7180000000558_1 unplaced-scaffold na na JIBL01000021.1 <> na Primary Assembly 3017 na ctg7180000000559_1 unplaced-scaffold na na JIBL01000022.1 <> na Primary Assembly 3063 na ctg7180000000561_1 unplaced-scaffold na na JIBL01000023.1 <> na Primary Assembly 3965 na ctg7180000000562_1 unplaced-scaffold na na JIBL01000024.1 <> na Primary Assembly 3727 na ctg7180000000563_1 unplaced-scaffold na na JIBL01000025.1 <> na Primary Assembly 1456 na ctg7180000000564_1 unplaced-scaffold na na JIBL01000026.1 <> na Primary Assembly 577 na ctg7180000000565_1 unplaced-scaffold na na JIBL01000027.1 <> na Primary Assembly 559 na ctg7180000000566_1 unplaced-scaffold na na JIBL01000028.1 <> na Primary Assembly 442 na ctg7180000000568_1 unplaced-scaffold na na JIBL01000029.1 <> na Primary Assembly 2253 na ctg7180000000569_1 unplaced-scaffold na na JIBL01000030.1 <> na Primary Assembly 2066 na ctg7180000000570_1 unplaced-scaffold na na JIBL01000031.1 <> na Primary Assembly 2014 na ctg7180000000571_1 unplaced-scaffold na na JIBL01000032.1 <> na Primary Assembly 443 na ctg7180000000574_1 unplaced-scaffold na na JIBL01000033.1 <> na Primary Assembly 314 na ctg7180000000575_1 unplaced-scaffold na na JIBL01000034.1 <> na Primary Assembly 318 na ctg7180000000576_1 unplaced-scaffold na na JIBL01000035.1 <> na Primary Assembly 390 na ctg7180000000577_1 unplaced-scaffold na na JIBL01000036.1 <> na Primary Assembly 300 na ctg7180000000579_1 unplaced-scaffold na na JIBL01000037.1 <> na Primary Assembly 316 na ctg7180000000580_1 unplaced-scaffold na na JIBL01000038.1 <> na Primary Assembly 407 na ctg7180000000582_1 unplaced-scaffold na na JIBL01000039.1 <> na Primary Assembly 317 na ctg7180000000583_1 unplaced-scaffold na na JIBL01000040.1 <> na Primary Assembly 2047 na ctg7180000000584_1 unplaced-scaffold na na JIBL01000041.1 <> na Primary Assembly 1451 na ctg7180000000585_1 unplaced-scaffold na na JIBL01000042.1 <> na Primary Assembly 840 na ctg7180000000586_1 unplaced-scaffold na na JIBL01000043.1 <> na Primary Assembly 1740 na ctg7180000000587_1 unplaced-scaffold na na JIBL01000044.1 <> na Primary Assembly 1344 na ctg7180000000588_1 unplaced-scaffold na na JIBL01000045.1 <> na Primary Assembly 1226 na ctg7180000000589_1 unplaced-scaffold na na JIBL01000046.1 <> na Primary Assembly 1075 na ctg7180000000590_1 unplaced-scaffold na na JIBL01000047.1 <> na Primary Assembly 713 na ctg7180000000591_1 unplaced-scaffold na na JIBL01000048.1 <> na Primary Assembly 579 na ctg7180000000592_1 unplaced-scaffold na na JIBL01000049.1 <> na Primary Assembly 555 na ctg7180000000593_1 unplaced-scaffold na na JIBL01000050.1 <> na Primary Assembly 537 na ctg7180000000594_1 unplaced-scaffold na na JIBL01000051.1 <> na Primary Assembly 521 na ctg7180000000595_1 unplaced-scaffold na na JIBL01000052.1 <> na Primary Assembly 470 na ctg7180000000596_1 unplaced-scaffold na na JIBL01000053.1 <> na Primary Assembly 451 na ctg7180000000597_1 unplaced-scaffold na na JIBL01000054.1 <> na Primary Assembly 422 na ctg7180000000598_1 unplaced-scaffold na na JIBL01000055.1 <> na Primary Assembly 401 na ctg7180000000599_1 unplaced-scaffold na na JIBL01000056.1 <> na Primary Assembly 386 na ctg7180000000601_1 unplaced-scaffold na na JIBL01000057.1 <> na Primary Assembly 370 na ctg7180000000602_1 unplaced-scaffold na na JIBL01000058.1 <> na Primary Assembly 366 na ctg7180000000603_1 unplaced-scaffold na na JIBL01000059.1 <> na Primary Assembly 332 na ctg7180000000604_1 unplaced-scaffold na na JIBL01000060.1 <> na Primary Assembly 331 na ctg7180000000605_1 unplaced-scaffold na na JIBL01000061.1 <> na Primary Assembly 292 na ctg7180000000606_1 unplaced-scaffold na na JIBL01000062.1 <> na Primary Assembly 323 na ctg7180000000607_1 unplaced-scaffold na na JIBL01000063.1 <> na Primary Assembly 322 na ctg7180000000609_1 unplaced-scaffold na na JIBL01000064.1 <> na Primary Assembly 316 na ctg7180000000610_1 unplaced-scaffold na na JIBL01000065.1 <> na Primary Assembly 313 na ctg7180000000612_1 unplaced-scaffold na na JIBL01000066.1 <> na Primary Assembly 310 na ctg7180000000613_1 unplaced-scaffold na na JIBL01000067.1 <> na Primary Assembly 310 na ctg7180000000614_1 unplaced-scaffold na na JIBL01000068.1 <> na Primary Assembly 307 na ctg7180000000615_1 unplaced-scaffold na na JIBL01000069.1 <> na Primary Assembly 305 na ctg7180000000625_1 unplaced-scaffold na na JIBL01000070.1 <> na Primary Assembly 2047 na ctg7180000000626_1 unplaced-scaffold na na JIBL01000071.1 <> na Primary Assembly 52903 na ctg7180000000627_1 unplaced-scaffold na na JIBL01000072.1 <> na Primary Assembly 14795 na ctg7180000000628_1 unplaced-scaffold na na JIBL01000073.1 <> na Primary Assembly 6239 na ctg7180000000629_1 unplaced-scaffold na na JIBL01000074.1 <> na Primary Assembly 2304 na ctg7180000000630_1 unplaced-scaffold na na JIBL01000075.1 <> na Primary Assembly 4708 na ctg7180000000631_1 unplaced-scaffold na na JIBL01000076.1 <> na Primary Assembly 155964 na ctg7180000000632_1 unplaced-scaffold na na JIBL01000077.1 <> na Primary Assembly 115320 na ctg7180000000633_1 unplaced-scaffold na na JIBL01000078.1 <> na Primary Assembly 4807 na ctg7180000000634_1 unplaced-scaffold na na JIBL01000079.1 <> na Primary Assembly 62464 na ctg7180000000635_1 unplaced-scaffold na na JIBL01000080.1 <> na Primary Assembly 34679 na ctg7180000000636_1 unplaced-scaffold na na JIBL01000081.1 <> na Primary Assembly 663 na ctg7180000000637_1 unplaced-scaffold na na JIBL01000082.1 <> na Primary Assembly 1263 na ctg7180000000638_1 unplaced-scaffold na na JIBL01000083.1 <> na Primary Assembly 549 na ctg7180000000639_1 unplaced-scaffold na na JIBL01000084.1 <> na Primary Assembly 248521 na ctg7180000000640_1 unplaced-scaffold na na JIBL01000085.1 <> na Primary Assembly 187952 na ctg7180000000641_1 unplaced-scaffold na na JIBL01000086.1 <> na Primary Assembly 87569 na ctg7180000000642_1 unplaced-scaffold na na JIBL01000087.1 <> na Primary Assembly 93346 na ctg7180000000643_1 unplaced-scaffold na na JIBL01000088.1 <> na Primary Assembly 67342 na ctg7180000000644_1 unplaced-scaffold na na JIBL01000089.1 <> na Primary Assembly 60508 na ctg7180000000645_1 unplaced-scaffold na na JIBL01000090.1 <> na Primary Assembly 38189 na ctg7180000000646_1 unplaced-scaffold na na JIBL01000091.1 <> na Primary Assembly 24275 na ctg7180000000647_1 unplaced-scaffold na na JIBL01000092.1 <> na Primary Assembly 17224 na ctg7180000000648_1 unplaced-scaffold na na JIBL01000093.1 <> na Primary Assembly 13655 na ctg7180000000649_1 unplaced-scaffold na na JIBL01000094.1 <> na Primary Assembly 8643 na ctg7180000000650_1 unplaced-scaffold na na JIBL01000095.1 <> na Primary Assembly 2927 na ctg7180000000651_1 unplaced-scaffold na na JIBL01000096.1 <> na Primary Assembly 4236 na ctg7180000000652_1 unplaced-scaffold na na JIBL01000097.1 <> na Primary Assembly 5218 na ctg7180000000653_1 unplaced-scaffold na na JIBL01000098.1 <> na Primary Assembly 3858 na ctg7180000000654_1 unplaced-scaffold na na JIBL01000099.1 <> na Primary Assembly 3238 na ctg7180000000655_1 unplaced-scaffold na na JIBL01000100.1 <> na Primary Assembly 1684 na ctg7180000000656_1 unplaced-scaffold na na JIBL01000101.1 <> na Primary Assembly 64020 na ctg7180000000657_1 unplaced-scaffold na na JIBL01000102.1 <> na Primary Assembly 2318 na ctg7180000000658_1 unplaced-scaffold na na JIBL01000103.1 <> na Primary Assembly 2303 na ctg7180000000659_1 unplaced-scaffold na na JIBL01000104.1 <> na Primary Assembly 7065 na ctg7180000000660_1 unplaced-scaffold na na JIBL01000105.1 <> na Primary Assembly 200271 na ctg7180000000661_1 unplaced-scaffold na na JIBL01000106.1 <> na Primary Assembly 203018 na ctg7180000000662_1 unplaced-scaffold na na JIBL01000107.1 <> na Primary Assembly 130019 na ctg7180000000663_1 unplaced-scaffold na na JIBL01000108.1 <> na Primary Assembly 231682 na ctg7180000000664_1 unplaced-scaffold na na JIBL01000109.1 <> na Primary Assembly 106413 na ctg7180000000665_1 unplaced-scaffold na na JIBL01000110.1 <> na Primary Assembly 103127 na ctg7180000000666_1 unplaced-scaffold na na JIBL01000111.1 <> na Primary Assembly 78377 na ctg7180000000667_1 unplaced-scaffold na na JIBL01000112.1 <> na Primary Assembly 84128 na ctg7180000000668_1 unplaced-scaffold na na JIBL01000113.1 <> na Primary Assembly 110963 na ctg7180000000669_1 unplaced-scaffold na na JIBL01000114.1 <> na Primary Assembly 61645 na ctg7180000000670_1 unplaced-scaffold na na JIBL01000115.1 <> na Primary Assembly 80978 na ctg7180000000671_1 unplaced-scaffold na na JIBL01000116.1 <> na Primary Assembly 44781 na ctg7180000000672_1 unplaced-scaffold na na JIBL01000117.1 <> na Primary Assembly 74688 na ctg7180000000673_1 unplaced-scaffold na na JIBL01000118.1 <> na Primary Assembly 67465 na ctg7180000000674_1 unplaced-scaffold na na JIBL01000119.1 <> na Primary Assembly 106895 na ctg7180000000675_1 unplaced-scaffold na na JIBL01000120.1 <> na Primary Assembly 60016 na ctg7180000000676_1 unplaced-scaffold na na JIBL01000121.1 <> na Primary Assembly 24601 na ctg7180000000677_1 unplaced-scaffold na na JIBL01000122.1 <> na Primary Assembly 55315 na ctg7180000000678_1 unplaced-scaffold na na JIBL01000123.1 <> na Primary Assembly 148735 na ctg7180000000679_1 unplaced-scaffold na na JIBL01000124.1 <> na Primary Assembly 50416 na ctg7180000000680_1 unplaced-scaffold na na JIBL01000125.1 <> na Primary Assembly 13050 na ctg7180000000681_1 unplaced-scaffold na na JIBL01000126.1 <> na Primary Assembly 15667 na ctg7180000000682_1 unplaced-scaffold na na JIBL01000127.1 <> na Primary Assembly 25682 na ctg7180000000683_1 unplaced-scaffold na na JIBL01000128.1 <> na Primary Assembly 48118 na ctg7180000000684_1 unplaced-scaffold na na JIBL01000129.1 <> na Primary Assembly 387383 na ctg7180000000685_1 unplaced-scaffold na na JIBL01000130.1 <> na Primary Assembly 374773 na ctg7180000000686_1 unplaced-scaffold na na JIBL01000131.1 <> na Primary Assembly 367910 na ctg7180000000687_1 unplaced-scaffold na na JIBL01000132.1 <> na Primary Assembly 247418 na ctg7180000000688_1 unplaced-scaffold na na JIBL01000133.1 <> na Primary Assembly 430812 na ctg7180000000689_1 unplaced-scaffold na na JIBL01000134.1 <> na Primary Assembly 135422 na ctg7180000000690_1 unplaced-scaffold na na JIBL01000135.1 <> na Primary Assembly 159271 na ctg7180000000691_1 unplaced-scaffold na na JIBL01000136.1 <> na Primary Assembly 367210 na ctg7180000000692_1 unplaced-scaffold na na JIBL01000137.1 <> na Primary Assembly 86683 na ctg7180000000693_1 unplaced-scaffold na na JIBL01000138.1 <> na Primary Assembly 200515 na ctg7180000000694_1 unplaced-scaffold na na JIBL01000139.1 <> na Primary Assembly 81404 na ctg7180000000695_1 unplaced-scaffold na na JIBL01000140.1 <> na Primary Assembly 69989 na ctg7180000000696_1 unplaced-scaffold na na JIBL01000141.1 <> na Primary Assembly 88262 na ctg7180000000697_1 unplaced-scaffold na na JIBL01000142.1 <> na Primary Assembly 56196 na ctg7180000000698_1 unplaced-scaffold na na JIBL01000143.1 <> na Primary Assembly 280631 na ctg7180000000699_1 unplaced-scaffold na na JIBL01000144.1 <> na Primary Assembly 702637 na ctg7180000000700_1 unplaced-scaffold na na JIBL01000145.1 <> na Primary Assembly 489201 na