# Assembly name: SL4.0 # Organism name: Solanum lycopersicum (tomato) # Infraspecific name: cultivar=Heinz 1706 # Taxid: 4081 # BioSample: SAMN02981290 # BioProject: PRJNA119 # Submitter: Solanaceae Genomics Project # Date: 2025-02-27 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: AEKE04 # Assembly method: Canu v. 1.8 # Expected final version: no # Genome coverage: 80.0x # Sequencing technology: PacBio # GenBank assembly accession: GCA_000188115.5 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000188125.5 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SL4.0ch01 assembled-molecule 1 Chromosome CM001064.4 <> na Primary Assembly 90863682 na SL4.0ch02 assembled-molecule 2 Chromosome CM001065.4 <> na Primary Assembly 53473368 na SL4.0ch03 assembled-molecule 3 Chromosome CM001066.4 <> na Primary Assembly 65298490 na SL4.0ch04 assembled-molecule 4 Chromosome CM001067.4 <> na Primary Assembly 64459972 na SL4.0ch05 assembled-molecule 5 Chromosome CM001068.4 <> na Primary Assembly 65269487 na SL4.0ch06 assembled-molecule 6 Chromosome CM001069.4 <> na Primary Assembly 47258699 na SL4.0ch07 assembled-molecule 7 Chromosome CM001070.4 <> na Primary Assembly 67883646 na SL4.0ch08 assembled-molecule 8 Chromosome CM001071.4 <> na Primary Assembly 63995357 na SL4.0ch09 assembled-molecule 9 Chromosome CM001072.4 <> na Primary Assembly 68513564 na SL4.0ch10 assembled-molecule 10 Chromosome CM001073.4 <> na Primary Assembly 64792705 na SL4.0ch11 assembled-molecule 11 Chromosome CM001074.4 <> na Primary Assembly 54379777 na SL4.0ch12 assembled-molecule 12 Chromosome CM001075.4 <> na Primary Assembly 66688036 na Contig100 unplaced-scaffold na na AEKE04000013.1 <> na Primary Assembly 94800 na Contig101 unplaced-scaffold na na AEKE04000014.1 <> na Primary Assembly 36229 na Contig105 unplaced-scaffold na na AEKE04000015.1 <> na Primary Assembly 18662 na Contig106 unplaced-scaffold na na AEKE04000016.1 <> na Primary Assembly 71506 na Contig107 unplaced-scaffold na na AEKE04000017.1 <> na Primary Assembly 49912 na Contig108 unplaced-scaffold na na AEKE04000018.1 <> na Primary Assembly 75042 na Contig109 unplaced-scaffold na na AEKE04000019.1 <> na Primary Assembly 34458 na Contig111 unplaced-scaffold na na AEKE04000020.1 <> na Primary Assembly 20057 na Contig113 unplaced-scaffold na na AEKE04000021.1 <> na Primary Assembly 31693 na Contig114 unplaced-scaffold na na AEKE04000022.1 <> na Primary Assembly 91759 na Contig116 unplaced-scaffold na na AEKE04000023.1 <> na Primary Assembly 17438 na Contig118 unplaced-scaffold na na AEKE04000024.1 <> na Primary Assembly 36025 na Contig119 unplaced-scaffold na na AEKE04000025.1 <> na Primary Assembly 47857 na Contig121 unplaced-scaffold na na AEKE04000026.1 <> na Primary Assembly 38024 na Contig122 unplaced-scaffold na na AEKE04000027.1 <> na Primary Assembly 32351 na Contig124 unplaced-scaffold na na AEKE04000028.1 <> na Primary Assembly 59619 na Contig125 unplaced-scaffold na na AEKE04000029.1 <> na Primary Assembly 22558 na Contig126 unplaced-scaffold na na AEKE04000030.1 <> na Primary Assembly 29755 na Contig129 unplaced-scaffold na na AEKE04000031.1 <> na Primary Assembly 72369 na Contig130 unplaced-scaffold na na AEKE04000032.1 <> na Primary Assembly 47213 na Contig131 unplaced-scaffold na na AEKE04000033.1 <> na Primary Assembly 29321 na Contig132 unplaced-scaffold na na AEKE04000034.1 <> na Primary Assembly 46755 na Contig133 unplaced-scaffold na na AEKE04000035.1 <> na Primary Assembly 32934 na Contig135 unplaced-scaffold na na AEKE04000036.1 <> na Primary Assembly 108375 na Contig137 unplaced-scaffold na na AEKE04000037.1 <> na Primary Assembly 37553 na Contig139 unplaced-scaffold na na AEKE04000038.1 <> na Primary Assembly 30707 na Contig14 unplaced-scaffold na na AEKE04000039.1 <> na Primary Assembly 27478 na Contig140 unplaced-scaffold na na AEKE04000040.1 <> na Primary Assembly 85544 na Contig141 unplaced-scaffold na na AEKE04000041.1 <> na Primary Assembly 97519 na Contig143 unplaced-scaffold na na AEKE04000042.1 <> na Primary Assembly 75921 na Contig144 unplaced-scaffold na na AEKE04000043.1 <> na Primary Assembly 27400 na Contig145 unplaced-scaffold na na AEKE04000044.1 <> na Primary Assembly 47196 na Contig146 unplaced-scaffold na na AEKE04000045.1 <> na Primary Assembly 54208 na Contig148 unplaced-scaffold na na AEKE04000046.1 <> na Primary Assembly 27395 na Contig149 unplaced-scaffold na na AEKE04000047.1 <> na Primary Assembly 42090 na Contig150 unplaced-scaffold na na AEKE04000048.1 <> na Primary Assembly 50437 na Contig151 unplaced-scaffold na na AEKE04000049.1 <> na Primary Assembly 43130 na Contig152 unplaced-scaffold na na AEKE04000050.1 <> na Primary Assembly 130107 na Contig153 unplaced-scaffold na na AEKE04000051.1 <> na Primary Assembly 20371 na Contig154 unplaced-scaffold na na AEKE04000052.1 <> na Primary Assembly 42077 na Contig155 unplaced-scaffold na na AEKE04000053.1 <> na Primary Assembly 157505 na Contig157 unplaced-scaffold na na AEKE04000054.1 <> na Primary Assembly 60659 na Contig158 unplaced-scaffold na na AEKE04000055.1 <> na Primary Assembly 89351 na Contig159 unplaced-scaffold na na AEKE04000056.1 <> na Primary Assembly 63287 na Contig160 unplaced-scaffold na na AEKE04000057.1 <> na Primary Assembly 26782 na Contig161 unplaced-scaffold na na AEKE04000058.1 <> na Primary Assembly 54676 na Contig162 unplaced-scaffold na na AEKE04000059.1 <> na Primary Assembly 17841 na Contig163 unplaced-scaffold na na AEKE04000060.1 <> na Primary Assembly 52506 na Contig164 unplaced-scaffold na na AEKE04000061.1 <> na Primary Assembly 31908 na Contig165 unplaced-scaffold na na AEKE04000062.1 <> na Primary Assembly 72921 na Contig166 unplaced-scaffold na na AEKE04000063.1 <> na Primary Assembly 51752 na Contig167 unplaced-scaffold na na AEKE04000064.1 <> na Primary Assembly 381857 na Contig169 unplaced-scaffold na na AEKE04000065.1 <> na Primary Assembly 54748 na Contig17 unplaced-scaffold na na AEKE04000066.1 <> na Primary Assembly 25823 na Contig170 unplaced-scaffold na na AEKE04000067.1 <> na Primary Assembly 23705 na Contig172 unplaced-scaffold na na AEKE04000068.1 <> na Primary Assembly 51135 na Contig173 unplaced-scaffold na na AEKE04000069.1 <> na Primary Assembly 51095 na Contig174 unplaced-scaffold na na AEKE04000070.1 <> na Primary Assembly 59074 na Contig178 unplaced-scaffold na na AEKE04000071.1 <> na Primary Assembly 45250 na Contig179 unplaced-scaffold na na AEKE04000072.1 <> na Primary Assembly 83055 na Contig180 unplaced-scaffold na na AEKE04000073.1 <> na Primary Assembly 25628 na Contig181 unplaced-scaffold na na AEKE04000074.1 <> na Primary Assembly 31918 na Contig183 unplaced-scaffold na na AEKE04000075.1 <> na Primary Assembly 36285 na Contig185 unplaced-scaffold na na AEKE04000076.1 <> na Primary Assembly 55527 na Contig186 unplaced-scaffold na na AEKE04000077.1 <> na Primary Assembly 58734 na Contig188 unplaced-scaffold na na AEKE04000078.1 <> na Primary Assembly 34272 na Contig189 unplaced-scaffold na na AEKE04000079.1 <> na Primary Assembly 46972 na Contig19 unplaced-scaffold na na AEKE04000080.1 <> na Primary Assembly 110851 na Contig195 unplaced-scaffold na na AEKE04000081.1 <> na Primary Assembly 228710 na Contig196 unplaced-scaffold na na AEKE04000082.1 <> na Primary Assembly 31986 na Contig197 unplaced-scaffold na na AEKE04000083.1 <> na Primary Assembly 358697 na Contig198 unplaced-scaffold na na AEKE04000084.1 <> na Primary Assembly 24080 na Contig199 unplaced-scaffold na na AEKE04000085.1 <> na Primary Assembly 30800 na Contig20 unplaced-scaffold na na AEKE04000086.1 <> na Primary Assembly 27570 na Contig200 unplaced-scaffold na na AEKE04000087.1 <> na Primary Assembly 26220 na Contig201 unplaced-scaffold na na AEKE04000088.1 <> na Primary Assembly 44851 na Contig202 unplaced-scaffold na na AEKE04000089.1 <> na Primary Assembly 64413 na Contig204 unplaced-scaffold na na AEKE04000090.1 <> na Primary Assembly 51511 na Contig205 unplaced-scaffold na na AEKE04000091.1 <> na Primary Assembly 25634 na Contig206 unplaced-scaffold na na AEKE04000092.1 <> na Primary Assembly 63722 na Contig207 unplaced-scaffold na na AEKE04000093.1 <> na Primary Assembly 40594 na Contig208 unplaced-scaffold na na AEKE04000094.1 <> na Primary Assembly 26362 na Contig209 unplaced-scaffold na na AEKE04000095.1 <> na Primary Assembly 13868 na Contig21 unplaced-scaffold na na AEKE04000096.1 <> na Primary Assembly 25505 na Contig210 unplaced-scaffold na na AEKE04000097.1 <> na Primary Assembly 32575 na Contig211 unplaced-scaffold na na AEKE04000098.1 <> na Primary Assembly 121231 na Contig23 unplaced-scaffold na na AEKE04000099.1 <> na Primary Assembly 27068 na Contig25 unplaced-scaffold na na AEKE04000100.1 <> na Primary Assembly 54863 na Contig26 unplaced-scaffold na na AEKE04000101.1 <> na Primary Assembly 26372 na Contig27 unplaced-scaffold na na AEKE04000102.1 <> na Primary Assembly 20698 na Contig28 unplaced-scaffold na na AEKE04000103.1 <> na Primary Assembly 33584 na Contig29 unplaced-scaffold na na AEKE04000104.1 <> na Primary Assembly 41778 na Contig3 unplaced-scaffold na na AEKE04000105.1 <> na Primary Assembly 187971 na Contig31 unplaced-scaffold na na AEKE04000106.1 <> na Primary Assembly 40332 na Contig32 unplaced-scaffold na na AEKE04000107.1 <> na Primary Assembly 60208 na Contig33 unplaced-scaffold na na AEKE04000108.1 <> na Primary Assembly 92175 na Contig34 unplaced-scaffold na na AEKE04000109.1 <> na Primary Assembly 51146 na Contig36 unplaced-scaffold na na AEKE04000110.1 <> na Primary Assembly 48077 na Contig37 unplaced-scaffold na na AEKE04000111.1 <> na Primary Assembly 53596 na Contig38 unplaced-scaffold na na AEKE04000112.1 <> na Primary Assembly 65294 na Contig40 unplaced-scaffold na na AEKE04000113.1 <> na Primary Assembly 28785 na Contig42 unplaced-scaffold na na AEKE04000114.1 <> na Primary Assembly 24557 na Contig44 unplaced-scaffold na na AEKE04000115.1 <> na Primary Assembly 116638 na Contig46 unplaced-scaffold na na AEKE04000116.1 <> na Primary Assembly 67197 na Contig47 unplaced-scaffold na na AEKE04000117.1 <> na Primary Assembly 127992 na Contig48 unplaced-scaffold na na AEKE04000118.1 <> na Primary Assembly 120304 na Contig49 unplaced-scaffold na na AEKE04000119.1 <> na Primary Assembly 23937 na Contig50 unplaced-scaffold na na AEKE04000120.1 <> na Primary Assembly 28553 na Contig51 unplaced-scaffold na na AEKE04000121.1 <> na Primary Assembly 31511 na Contig55 unplaced-scaffold na na AEKE04000122.1 <> na Primary Assembly 160725 na Contig56 unplaced-scaffold na na AEKE04000123.1 <> na Primary Assembly 31841 na Contig57 unplaced-scaffold na na AEKE04000124.1 <> na Primary Assembly 50302 na Contig59 unplaced-scaffold na na AEKE04000125.1 <> na Primary Assembly 42586 na Contig60 unplaced-scaffold na na AEKE04000126.1 <> na Primary Assembly 44545 na Contig61 unplaced-scaffold na na AEKE04000127.1 <> na Primary Assembly 43395 na Contig62 unplaced-scaffold na na AEKE04000128.1 <> na Primary Assembly 19418 na Contig65 unplaced-scaffold na na AEKE04000129.1 <> na Primary Assembly 22368 na Contig67 unplaced-scaffold na na AEKE04000130.1 <> na Primary Assembly 33918 na Contig68 unplaced-scaffold na na AEKE04000131.1 <> na Primary Assembly 376842 na Contig69 unplaced-scaffold na na AEKE04000132.1 <> na Primary Assembly 20939 na Contig7 unplaced-scaffold na na AEKE04000133.1 <> na Primary Assembly 34164 na Contig70 unplaced-scaffold na na AEKE04000134.1 <> na Primary Assembly 30314 na Contig72 unplaced-scaffold na na AEKE04000135.1 <> na Primary Assembly 31586 na Contig73 unplaced-scaffold na na AEKE04000136.1 <> na Primary Assembly 133393 na Contig75 unplaced-scaffold na na AEKE04000137.1 <> na Primary Assembly 47025 na Contig77 unplaced-scaffold na na AEKE04000138.1 <> na Primary Assembly 35227 na Contig78 unplaced-scaffold na na AEKE04000139.1 <> na Primary Assembly 188908 na Contig79 unplaced-scaffold na na AEKE04000140.1 <> na Primary Assembly 49646 na Contig80 unplaced-scaffold na na AEKE04000141.1 <> na Primary Assembly 29184 na Contig82 unplaced-scaffold na na AEKE04000142.1 <> na Primary Assembly 47152 na Contig84 unplaced-scaffold na na AEKE04000143.1 <> na Primary Assembly 108974 na Contig86 unplaced-scaffold na na AEKE04000144.1 <> na Primary Assembly 34171 na Contig87 unplaced-scaffold na na AEKE04000145.1 <> na Primary Assembly 95153 na Contig88 unplaced-scaffold na na AEKE04000146.1 <> na Primary Assembly 74894 na Contig91 unplaced-scaffold na na AEKE04000147.1 <> na Primary Assembly 51118 na Contig92 unplaced-scaffold na na AEKE04000148.1 <> na Primary Assembly 54819 na Contig93 unplaced-scaffold na na AEKE04000149.1 <> na Primary Assembly 53794 na Contig96 unplaced-scaffold na na AEKE04000150.1 <> na Primary Assembly 247288 na Contig97 unplaced-scaffold na na AEKE04000151.1 <> na Primary Assembly 132398 na Contig99 unplaced-scaffold na na AEKE04000152.1 <> na Primary Assembly 19799 na