This directory contains reciprocal-best netted chains for thaSir1-mm10. - thaSir1.mm10.rbest.net.gz: thaSir1-referenced recip.best net to mm10. - thaSir1.mm10.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from thaSir1 to mm10 through the recip.best net. - mm10.thaSir1.rbest.net.gz: mm10-referenced recip.best net. - mm10.thaSir1.rbest.chain.gz: recip.best "liftOver" chains. - axtRBestNet/thaSir1.mm10.rbest.axt.gz reciprocal best alignments in AXT format See also, description of AXT format:: http://genome.ucsc.edu/goldenPath/help/axt.html description of CHAIN format: http://genome.ucsc.edu/goldenPath/help/chain.html description of NET format: http://genome.ucsc.edu/goldenPath/help/net.html