This directory contains reciprocal-best netted chains for tarSyr2-papAnu2.

 - tarSyr2.papAnu2.rbest.net.gz: tarSyr2-referenced recip.best net to papAnu2.
 - tarSyr2.papAnu2.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from tarSyr2 to papAnu2 through the recip.best net.

 - papAnu2.tarSyr2.rbest.net.gz: papAnu2-referenced recip.best net.
 - papAnu2.tarSyr2.rbest.chain.gz: recip.best "liftOver" chains.

 - directory axtRBestNet/ - reciprocal best alignments in axt file format
   http://genome.ucsc.edu/goldenPath/help/axt.html