This directory contains reciprocal-best netted chains for tarSyr2-panPan1. - tarSyr2.panPan1.rbest.net.gz: tarSyr2-referenced recip.best net to panPan1. - tarSyr2.panPan1.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from tarSyr2 to panPan1 through the recip.best net. - panPan1.tarSyr2.rbest.net.gz: panPan1-referenced recip.best net. - panPan1.tarSyr2.rbest.chain.gz: recip.best "liftOver" chains. - directory axtRBestNet/ - reciprocal best alignments in axt file format http://genome.ucsc.edu/goldenPath/help/axt.html