This directory contains reciprocal-best netted chains for tarSyr2-micMur1. - tarSyr2.micMur1.rbest.net.gz: tarSyr2-referenced recip.best net to micMur1. - tarSyr2.micMur1.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from tarSyr2 to micMur1 through the recip.best net. - micMur1.tarSyr2.rbest.net.gz: micMur1-referenced recip.best net. - micMur1.tarSyr2.rbest.chain.gz: recip.best "liftOver" chains. - directory axtRBestNet/ - reciprocal best alignments in axt file format http://genome.ucsc.edu/goldenPath/help/axt.html