This directory contains reciprocal-best netted chains for susScr11-hg38. - susScr11.hg38.rbest.net.gz: susScr11-referenced recip.best net to hg38. - susScr11.hg38.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from susScr11 to hg38 through the recip.best net. - hg38.susScr11.rbest.net.gz: hg38-referenced recip.best net. - hg38.susScr11.rbest.chain.gz: recip.best "liftOver" chains. - axtRBestNet/susScr11.hg38.rbest.axt.gz reciprocal best alignments in AXT format See also, description of AXT format:: http://genome.ucsc.edu/goldenPath/help/axt.html description of CHAIN format: http://genome.ucsc.edu/goldenPath/help/chain.html description of NET format: http://genome.ucsc.edu/goldenPath/help/net.html