This directory contains the Feb. 2006 (ASM1342v1/staAur1) assembly of the
    staph genome (staAur1, University of Oklahoma Health Sciences Center)
    in one gzip-compressed FASTA file per chromosome.

For more information about this assembly, please note the NCBI resources:
    http://www.ncbi.nlm.nih.gov/genome/154
    http://www.ncbi.nlm.nih.gov/genome/assembly/34528
    http://www.ncbi.nlm.nih.gov/bioproject/237
    http://www.ncbi.nlm.nih.gov/bioproject/SAMN02604235

Repeats from RepeatMasker and Tandem Repeats Finder (with period
of 12 or less) are shown in lower case; non-repeating sequence is
shown in upper case.

This assembly was produced by ***PLEASE FILL IN SEQUENCING CENTER***.
For more information on the staph genome, see the project website:
  ***PLEASE INSERT PROJECT URL OR REMOVE THIS STATEMENT***

Files included in this directory:

  - chr*.fa.gz: compressed FASTA sequence of each chromosome.

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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.soe.ucsc.edu, then
go to the directory goldenPath/staAur1/chromosomes. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/staAur1/chromosomes/ .
For a single file, e.g. chrM.fa.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/staAur1/chromosomes/chrM.fa.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/staAur1/chromosomes/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/staAur1/chromosomes/chrM.fa.gz' 
        -O chrM.fa.gz

To uncompress the fa.gz files:
    gunzip <file>.fa.gz

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GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
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