This directory contains reciprocal-best netted chains for saiBol1-tarSyr2.

 - saiBol1.tarSyr2.rbest.net.gz: saiBol1-referenced recip.best net to tarSyr2.
 - saiBol1.tarSyr2.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from saiBol1 to tarSyr2 through the recip.best net.

 - tarSyr2.saiBol1.rbest.net.gz: tarSyr2-referenced recip.best net.
 - tarSyr2.saiBol1.rbest.chain.gz: recip.best "liftOver" chains.

 - directory axtRBestNet/ - reciprocal best alignments in axt file format
   http://genome.ucsc.edu/goldenPath/help/axt.html