This directory contains reciprocal-best netted chains for rn6-calMil1.

 - rn6.calMil1.rbest.net.gz: rn6-referenced recip.best net to calMil1.
 - rn6.calMil1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from rn6 to calMil1 through the recip.best net.

 - calMil1.rn6.rbest.net.gz: calMil1-referenced recip.best net.
 - calMil1.rn6.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/rn6.calMil1.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html