This directory contains a dump of the UCSC genome annotation database 
for the Jan. 2003 update of the rat genome (rn2, Jan. 2003) from the 
Rat Genome Sequencing Consortium. This assembly was produced 
at the Baylor College of Medicine Human Genome Seuqencing Center. 
For more information on the rat genome, see the Baylor Rat Genome 
Project website at http://www.hgsc.bcm.tmc.edu/.  

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables. 
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited 
    format compressed with gzip. 

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If you plan to download a large file or multiple files from this 
directory, we recommend that you use ftp rather than downloading the 
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then 
go to the directory goldenPath/rnJan2003/database. To download 
multiple files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

All the files and tables in this directory are freely usable for any 
purpose except for the following:

   softberryGene.txt and softberryPep.txt -  Free for academic 
        and nonprofit use. Commercial users please contact
        Softberry Inc. at http://www.softberry.com.

   Swiss-Prot/UniProt data in knownGene.txt - 
        UniProt copyright (c) 2002 - 2004 UniProt consortium

        For non-commercial use all databases and documents in the UniProt FTP
        directory may be copied and redistributed freely, without advance 
        permission, provided that this copyright statement is reproduced with 
        each copy. 
        
        For commercial use all databases and documents in the UniProt FTP 
        directory, except the files
        
        ftp://ftp.uniprot.org/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz
        
        and
        
        ftp://ftp.uniprot.org/pub/databases/uniprot/knowledgebase/uniprot_sprot.xml.gz
        
        may be copied and redistributed freely, without advance permission, 
        provided that this copyright statement is reproduced with each copy.
        
        More information for commercial users can be found in:
        http://www.expasy.org/announce/sp_98.html
        
        From January 1, 2005, all databases and documents in the UniProt FTP 
        directory may be copied and redistributed freely by all entities, 
        without advance permission, provided that this copyright statement is 
        reproduced with each copy.