This directory contains the Mmul_0.1 rhesus genome assembly (rheMac1, 
Jan. 2005) produced by the Baylor College of Medicine Human Genome 
Sequencing Center.  For more information about these data, see the 
Baylor web page at http://www.hgsc.bcm.tmc.edu/projects/rmacaque/.

Files in this directory include:

est.fa.gz - Rhesus macaque ESTs in GenBank. This sequence data is updated 
    once a week via automatic GenBank updates.

md5sum.txt - MD5 checksum of these files to verify correct transmission.

mrna.fa.gz - Rhesus macaque mRNA from GenBank. This sequence data is 
    updated once a week via automatic GenBank updates.

rheMac1.hardmask.fa.gz
    Repeats from RepeatMasker and Tandem Repeats Finder (with period
    of 12 or less) are shown as Ns; non-repeating sequence is
    shown in upper case.  

rheMac1.softmask.fa.gz
    Repeats from RepeatMasker are shown in lower case; non-repeating 
    sequence is shown in upper case.  
    
rheMac1.softmask2.fa.gz
    Repeats from RepeatMasker and Tandem Repeats Finder (with period
    of 12 or less) are shown in lower case; non-repeating sequence is
    shown in upper case. RepeatMasker July 2004 version with RepBase 
    libraries: RepBase Update 9.04, RM database version 20040702.

xenoMrna.fa.gz - GenBank mRNAs from species other than that of 
    the genome. This sequence data is updated once a week via automatic 
    GenBank updates.

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If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/rheMac1/bigZips. To download multiple files, use
the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.