This directory contains reciprocal-best netted chains for ponAbe2-panTro4. - ponAbe2.panTro4.rbest.net.gz: ponAbe2-referenced recip.best net to panTro4. - ponAbe2.panTro4.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from ponAbe2 to panTro4 through the recip.best net. - panTro4.ponAbe2.rbest.net.gz: panTro4-referenced recip.best net. - panTro4.ponAbe2.rbest.chain.gz: recip.best "liftOver" chains. - axtRBestNet/*.ponAbe2.panTro4.net.axt.gz reciprocal best alignments in AXT format See also, description of AXT format:: http://genome.ucsc.edu/goldenPath/help/axt.html description of CHAIN format: http://genome.ucsc.edu/goldenPath/help/chain.html description of NET format: http://genome.ucsc.edu/goldenPath/help/net.html