This directory contains reciprocal-best netted chains for orcOrc1-bosTau8.

 - orcOrc1.bosTau8.rbest.net.gz: orcOrc1-referenced recip.best net to bosTau8.
 - orcOrc1.bosTau8.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from orcOrc1 to bosTau8 through the recip.best net.

 - bosTau8.orcOrc1.rbest.net.gz: bosTau8-referenced recip.best net.
 - bosTau8.orcOrc1.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/orcOrc1.bosTau8.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html