[DIR] Parent Directory

This directory contains data generated by the Snyder/Stanford lab as part of the ENCODE project. Further information is available in the Stan/Yale Histone track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:

  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2011-02-12wgEncodeSydhHistCh12H3k4me3IggyaleRawDataRep1.fastq.gz  771M  2010-05-12  dataType=ChipSeq; cell=CH12; treatment=None; antibody=H3K4me3; control=IgG-Yale; replicate=1; expId=2004; setType=exp; controlId=CH12/None/Input/IgG-Yale; subId=1194; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Yale-m; view=RawData; type=fastq; age=immortalized; dccAccession=wgEncodeEM002004; sex=F; strain=B10.H-2aH-4bp/Wts
      2011-02-12wgEncodeSydhHistCh12H3k04me3IggyaleAlnRep1.bam.bai  5.1M  2010-05-12  dataType=ChipSeq; cell=CH12; treatment=None; antibody=H3K4me3; control=IgG-Yale; replicate=1; expId=2004; setType=exp; controlId=CH12/None/Input/IgG-Yale; subId=4315; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-09; grant=Snyder; lab=Yale-m; view=Alignments; type=bai; age=immortalized; dccAccession=wgEncodeEM002004; sex=F; strain=B10.H-2aH-4bp/Wts
      2011-02-12wgEncodeSydhHistCh12H3k04me3IggyaleAlnRep1.bam  318M  2010-05-12  dataType=ChipSeq; cell=CH12; treatment=None; antibody=H3K4me3; control=IgG-Yale; replicate=1; expId=2004; setType=exp; controlId=CH12/None/Input/IgG-Yale; subId=4315; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-09; grant=Snyder; lab=Yale-m; view=Alignments; type=bam; age=immortalized; dccAccession=wgEncodeEM002004; sex=F; strain=B10.H-2aH-4bp/Wts
      2011-02-12wgEncodeSydhHistCh12H3k4me3IggyaleRawDataRep2.fastq.gz  916M  2010-05-12  dataType=ChipSeq; cell=CH12; treatment=None; antibody=H3K4me3; control=IgG-Yale; replicate=2; expId=2004; setType=exp; controlId=CH12/None/Input/IgG-Yale; subId=1194; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Yale-m; view=RawData; type=fastq; age=immortalized; dccAccession=wgEncodeEM002004; sex=F; strain=B10.H-2aH-4bp/Wts
      2011-02-12wgEncodeSydhHistCh12H3k04me3IggyaleAlnRep2.bam.bai  5.1M  2010-05-12  dataType=ChipSeq; cell=CH12; treatment=None; antibody=H3K4me3; control=IgG-Yale; replicate=2; expId=2004; setType=exp; controlId=CH12/None/Input/IgG-Yale; subId=4315; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-09; grant=Snyder; lab=Yale-m; view=Alignments; type=bai; age=immortalized; dccAccession=wgEncodeEM002004; sex=F; strain=B10.H-2aH-4bp/Wts
      2011-02-12wgEncodeSydhHistCh12H3k04me3IggyaleAlnRep2.bam  278M  2010-05-12  dataType=ChipSeq; cell=CH12; treatment=None; antibody=H3K4me3; control=IgG-Yale; replicate=2; expId=2004; setType=exp; controlId=CH12/None/Input/IgG-Yale; subId=4315; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-09; grant=Snyder; lab=Yale-m; view=Alignments; type=bam; age=immortalized; dccAccession=wgEncodeEM002004; sex=F; strain=B10.H-2aH-4bp/Wts
      2011-02-12wgEncodeSydhHistCh12H3k4me3IggyalePk.narrowPeak.gz  436K  2010-05-12  dataType=ChipSeq; cell=CH12; treatment=None; antibody=H3K4me3; control=IgG-Yale; expId=2004; setType=exp; controlId=CH12/None/Input/IgG-Yale; subId=1194; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Yale-m; labVersion=PeakSeq1.0; view=Peaks; type=narrowPeak; age=immortalized; dccAccession=wgEncodeEM002004; sex=F; strain=B10.H-2aH-4bp/Wts
      2011-02-12wgEncodeSydhHistCh12H3k4me3IggyaleSig.bigWig  218M  2010-05-12  dataType=ChipSeq; cell=CH12; treatment=None; antibody=H3K4me3; control=IgG-Yale; expId=2004; setType=exp; controlId=CH12/None/Input/IgG-Yale; subId=1194; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Yale-m; labVersion=PeakSeq1.0; view=Signal; type=bigWig; age=immortalized; dccAccession=wgEncodeEM002004; sex=F; strain=B10.H-2aH-4bp/Wts
      2011-01-22wgEncodeSydhHistCh12InputIggyaleAlnRep1.bam.bai  5.3M  2010-04-22  dataType=ChipSeq; cell=CH12; treatment=None; antibody=Input; control=IgG-Yale; replicate=1; expId=2001; setType=input; controlId=CH12/None/Input/IgG-Yale; subId=4316; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-09; grant=Snyder; lab=Yale-m; view=Alignments; type=bai; age=immortalized; dccAccession=wgEncodeEM002001; sex=F; strain=B10.H-2aH-4bp/Wts
      2011-01-22wgEncodeSydhHistCh12InputIggyaleAlnRep1.bam  515M  2010-04-22  dataType=ChipSeq; cell=CH12; treatment=None; antibody=Input; control=IgG-Yale; replicate=1; expId=2001; setType=input; controlId=CH12/None/Input/IgG-Yale; subId=4316; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-09; grant=Snyder; lab=Yale-m; view=Alignments; type=bam; age=immortalized; dccAccession=wgEncodeEM002001; sex=F; strain=B10.H-2aH-4bp/Wts
      2011-02-12wgEncodeSydhHistCh12InputIggyaleSig.bigWig  194M  2010-05-12  dataType=ChipSeq; cell=CH12; treatment=None; antibody=Input; control=IgG-Yale; expId=2001; setType=input; controlId=CH12/None/Input/IgG-Yale; subId=1195; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Yale-m; labVersion=PeakSeq1.0; view=Signal; type=bigWig; age=immortalized; dccAccession=wgEncodeEM002001; sex=F; strain=B10.H-2aH-4bp/Wts
      2011-02-12wgEncodeSydhHistCh12InputIggyaleRawData.fastq.gz  1.7G  2010-05-12  dataType=ChipSeq; cell=CH12; treatment=None; antibody=Input; control=IgG-Yale; expId=2001; setType=input; controlId=CH12/None/Input/IgG-Yale; subId=1195; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Yale-m; view=RawData; type=fastq; age=immortalized; dccAccession=wgEncodeEM002001; sex=F; strain=B10.H-2aH-4bp/Wts
      2012-01-20wgEncodeSydhHistMelH3k04me3Dm2p5dIggyaleAlnRep1.bam.bai  5.1M  2011-04-20  dataType=ChipSeq; cell=MEL; treatment=DMSO_2.0pct; antibody=H3K4me3; control=IgG-Yale; replicate=1; expId=2005; setType=exp; controlId=MEL/DMSO_2.0pct/Input/IgG-Yale; subId=3057; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=Yale-m; view=Alignments; type=bai; age=immortalized; dccAccession=wgEncodeEM002005; sex=M; strain=Unknown
      2012-01-20wgEncodeSydhHistMelH3k04me3Dm2p5dIggyaleAlnRep1.bam  288M  2011-04-20  dataType=ChipSeq; cell=MEL; treatment=DMSO_2.0pct; antibody=H3K4me3; control=IgG-Yale; replicate=1; expId=2005; setType=exp; controlId=MEL/DMSO_2.0pct/Input/IgG-Yale; subId=3057; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=Yale-m; view=Alignments; type=bam; age=immortalized; dccAccession=wgEncodeEM002005; sex=M; strain=Unknown
      2012-01-20wgEncodeSydhHistMelH3k04me3Dm2p5dIggyaleRawDataRep1.fastq.tgz  663M  2011-04-20  dataType=ChipSeq; cell=MEL; treatment=DMSO_2.0pct; antibody=H3K4me3; control=IgG-Yale; replicate=1; expId=2005; setType=exp; controlId=MEL/DMSO_2.0pct/Input/IgG-Yale; subId=3057; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=Yale-m; view=RawData; type=fastq; age=immortalized; dccAccession=wgEncodeEM002005; sex=M; strain=Unknown
      2012-01-20wgEncodeSydhHistMelH3k04me3Dm2p5dIggyaleAlnRep2.bam.bai  5.1M  2011-04-20  dataType=ChipSeq; cell=MEL; treatment=DMSO_2.0pct; antibody=H3K4me3; control=IgG-Yale; replicate=2; expId=2005; setType=exp; controlId=MEL/DMSO_2.0pct/Input/IgG-Yale; subId=3057; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=Yale-m; view=Alignments; type=bai; age=immortalized; dccAccession=wgEncodeEM002005; sex=M; strain=Unknown
      2012-01-20wgEncodeSydhHistMelH3k04me3Dm2p5dIggyaleAlnRep2.bam  287M  2011-04-20  dataType=ChipSeq; cell=MEL; treatment=DMSO_2.0pct; antibody=H3K4me3; control=IgG-Yale; replicate=2; expId=2005; setType=exp; controlId=MEL/DMSO_2.0pct/Input/IgG-Yale; subId=3057; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=Yale-m; view=Alignments; type=bam; age=immortalized; dccAccession=wgEncodeEM002005; sex=M; strain=Unknown
      2012-01-20wgEncodeSydhHistMelH3k04me3Dm2p5dIggyaleRawDataRep2.fastq.tgz  971M  2011-04-20  dataType=ChipSeq; cell=MEL; treatment=DMSO_2.0pct; antibody=H3K4me3; control=IgG-Yale; replicate=2; expId=2005; setType=exp; controlId=MEL/DMSO_2.0pct/Input/IgG-Yale; subId=3057; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=Yale-m; view=RawData; type=fastq; age=immortalized; dccAccession=wgEncodeEM002005; sex=M; strain=Unknown
      2012-01-20wgEncodeSydhHistMelH3k04me3Dm2p5dIggyalePk.narrowPeak.gz  298K  2011-04-20  dataType=ChipSeq; cell=MEL; treatment=DMSO_2.0pct; antibody=H3K4me3; control=IgG-Yale; expId=2005; setType=exp; controlId=MEL/DMSO_2.0pct/Input/IgG-Yale; subId=3057; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=Yale-m; labVersion=PeakSeq1.0; view=Peaks; type=narrowPeak; age=immortalized; dccAccession=wgEncodeEM002005; sex=M; strain=Unknown
      2012-01-20wgEncodeSydhHistMelH3k04me3Dm2p5dIggyaleSig.bigWig  247M  2011-04-20  dataType=ChipSeq; cell=MEL; treatment=DMSO_2.0pct; antibody=H3K4me3; control=IgG-Yale; expId=2005; setType=exp; controlId=MEL/DMSO_2.0pct/Input/IgG-Yale; subId=3057; dataVersion=post ENCODE Jan 2011 Freeze; grant=Snyder; lab=Yale-m; labVersion=PeakSeq1.0; view=Signal; type=bigWig; age=immortalized; dccAccession=wgEncodeEM002005; sex=M; strain=Unknown
      2011-04-09wgEncodeSydhHistMelInputDm2p5dIggyaleAlnRep1.bam.bai  5.4M  2010-07-09  dataType=ChipSeq; cell=MEL; treatment=DMSO_2.0pct; antibody=Input; control=IgG-Yale; replicate=1; expId=1963; setType=input; controlId=MEL/DMSO_2.0pct/Input/IgG-Yale; subId=4326; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-16; grant=Snyder; lab=Yale-m; view=Alignments; type=bai; age=immortalized; dccAccession=wgEncodeEM001963; sex=M; strain=Unknown
      2011-04-09wgEncodeSydhHistMelInputDm2p5dIggyaleAlnRep1.bam  617M  2010-07-09  dataType=ChipSeq; cell=MEL; treatment=DMSO_2.0pct; antibody=Input; control=IgG-Yale; replicate=1; expId=1963; setType=input; controlId=MEL/DMSO_2.0pct/Input/IgG-Yale; subId=4326; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-16; grant=Snyder; lab=Yale-m; view=Alignments; type=bam; age=immortalized; dccAccession=wgEncodeEM001963; sex=M; strain=Unknown
      2011-04-09wgEncodeSydhHistMelInputDm2p5dIggyaleRawDataRep1.fastq.tgz  1.9G  2010-07-09  dataType=ChipSeq; cell=MEL; treatment=DMSO_2.0pct; antibody=Input; control=IgG-Yale; replicate=1; expId=1963; setType=input; controlId=MEL/DMSO_2.0pct/Input/IgG-Yale; subId=4326; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-16; grant=Snyder; lab=Yale-m; view=RawData; type=fastq; age=immortalized; dccAccession=wgEncodeEM001963; sex=M; strain=Unknown
      2011-04-09wgEncodeSydhHistMelInputDm2p5dIggyaleSig.bigWig  265M  2010-07-09  dataType=ChipSeq; cell=MEL; treatment=DMSO_2.0pct; antibody=Input; control=IgG-Yale; expId=1963; setType=input; controlId=MEL/DMSO_2.0pct/Input/IgG-Yale; subId=4326; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-16; grant=Snyder; lab=Yale-m; labVersion=PeakSeq1.0; view=Signal; type=bigWig; age=immortalized; dccAccession=wgEncodeEM001963; sex=M; strain=Unknown
      2011-01-22wgEncodeSydhHistMelH3k4me3IggyaleRawDataRep1.fastq.gz  869M  2010-04-22  dataType=ChipSeq; cell=MEL; treatment=None; antibody=H3K4me3; control=IgG-Yale; replicate=1; expId=2002; setType=exp; controlId=MEL/None/Input/IgG-Yale; subId=1166; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Yale-m; view=RawData; type=fastq; age=immortalized; dccAccession=wgEncodeEM002002; sex=M; strain=Unknown
      2011-01-22wgEncodeSydhHistMelH3k04me3IggyaleAlnRep1.bam.bai  5.1M  2010-04-22  dataType=ChipSeq; cell=MEL; treatment=None; antibody=H3K4me3; control=IgG-Yale; replicate=1; expId=2002; setType=exp; controlId=MEL/None/Input/IgG-Yale; subId=4316; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-09; grant=Snyder; lab=Yale-m; view=Alignments; type=bai; age=immortalized; dccAccession=wgEncodeEM002002; sex=M; strain=Unknown
      2011-01-22wgEncodeSydhHistMelH3k04me3IggyaleAlnRep1.bam  342M  2010-04-22  dataType=ChipSeq; cell=MEL; treatment=None; antibody=H3K4me3; control=IgG-Yale; replicate=1; expId=2002; setType=exp; controlId=MEL/None/Input/IgG-Yale; subId=4316; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-09; grant=Snyder; lab=Yale-m; view=Alignments; type=bam; age=immortalized; dccAccession=wgEncodeEM002002; sex=M; strain=Unknown
      2011-01-22wgEncodeSydhHistMelH3k4me3IggyaleRawDataRep2.fastq.gz  858M  2010-04-22  dataType=ChipSeq; cell=MEL; treatment=None; antibody=H3K4me3; control=IgG-Yale; replicate=2; expId=2002; setType=exp; controlId=MEL/None/Input/IgG-Yale; subId=1166; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Yale-m; view=RawData; type=fastq; age=immortalized; dccAccession=wgEncodeEM002002; sex=M; strain=Unknown
      2011-01-22wgEncodeSydhHistMelH3k04me3IggyaleAlnRep2.bam.bai  5.0M  2010-04-22  dataType=ChipSeq; cell=MEL; treatment=None; antibody=H3K4me3; control=IgG-Yale; replicate=2; expId=2002; setType=exp; controlId=MEL/None/Input/IgG-Yale; subId=4316; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-09; grant=Snyder; lab=Yale-m; view=Alignments; type=bai; age=immortalized; dccAccession=wgEncodeEM002002; sex=M; strain=Unknown
      2011-01-22wgEncodeSydhHistMelH3k04me3IggyaleAlnRep2.bam  253M  2010-04-22  dataType=ChipSeq; cell=MEL; treatment=None; antibody=H3K4me3; control=IgG-Yale; replicate=2; expId=2002; setType=exp; controlId=MEL/None/Input/IgG-Yale; subId=4316; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-09; grant=Snyder; lab=Yale-m; view=Alignments; type=bam; age=immortalized; dccAccession=wgEncodeEM002002; sex=M; strain=Unknown
      2011-01-22wgEncodeSydhHistMelH3k4me3IggyaleSig.bigWig  211M  2010-04-22  dataType=ChipSeq; cell=MEL; treatment=None; antibody=H3K4me3; control=IgG-Yale; expId=2002; setType=exp; controlId=MEL/None/Input/IgG-Yale; subId=1166; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Yale-m; labVersion=PeakSeq1.0; view=Signal; type=bigWig; age=immortalized; dccAccession=wgEncodeEM002002; sex=M; strain=Unknown
      2011-01-22wgEncodeSydhHistMelH3k04me3IggyalePk.narrowPeak.gz  350K  2010-04-22  dataType=ChipSeq; cell=MEL; treatment=None; antibody=H3K4me3; control=IgG-Yale; expId=2002; setType=exp; controlId=MEL/None/Input/IgG-Yale; subId=4611; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-07-19; grant=Snyder; lab=Yale-m; view=Peaks; type=narrowPeak; age=immortalized; dccAccession=wgEncodeEM002002; sex=M; strain=Unknown
      2011-01-26wgEncodeSydhHistMelInputIggyaleAlnRep1.bam.bai  5.4M  2010-04-26  dataType=ChipSeq; cell=MEL; treatment=None; antibody=Input; control=IgG-Yale; replicate=1; expId=2003; setType=input; controlId=MEL/None/Input/IgG-Yale; subId=4316; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-09; grant=Snyder; lab=Yale-m; view=Alignments; type=bai; age=immortalized; dccAccession=wgEncodeEM002003; sex=M; strain=Unknown
      2011-01-26wgEncodeSydhHistMelInputIggyaleAlnRep1.bam  673M  2010-04-26  dataType=ChipSeq; cell=MEL; treatment=None; antibody=Input; control=IgG-Yale; replicate=1; expId=2003; setType=input; controlId=MEL/None/Input/IgG-Yale; subId=4316; dataVersion=post ENCODE Jan 2011 Freeze; dateResubmitted=2011-06-09; grant=Snyder; lab=Yale-m; view=Alignments; type=bam; age=immortalized; dccAccession=wgEncodeEM002003; sex=M; strain=Unknown
      2011-01-26wgEncodeSydhHistMelInputIggyaleSig.bigWig  233M  2010-04-26  dataType=ChipSeq; cell=MEL; treatment=None; antibody=Input; control=IgG-Yale; expId=2003; setType=input; controlId=MEL/None/Input/IgG-Yale; subId=1168; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Yale-m; labVersion=PeakSeq1.0; view=Signal; type=bigWig; age=immortalized; dccAccession=wgEncodeEM002003; sex=M; strain=Unknown
      2011-01-26wgEncodeSydhHistMelInputIggyaleRawData.fastq.gz  2.0G  2010-04-26  dataType=ChipSeq; cell=MEL; treatment=None; antibody=Input; control=IgG-Yale; expId=2003; setType=input; controlId=MEL/None/Input/IgG-Yale; subId=1168; dataVersion=ENCODE June 2010 Freeze; grant=Snyder; lab=Yale-m; view=RawData; type=fastq; age=immortalized; dccAccession=wgEncodeEM002003; sex=M; strain=Unknown
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