This directory contains reciprocal-best netted chains for mm39-loxAfr3. - mm39.loxAfr3.rbest.net.gz: mm39-referenced recip.best net to loxAfr3. - mm39.loxAfr3.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from mm39 to loxAfr3 through the recip.best net. - loxAfr3.mm39.rbest.net.gz: loxAfr3-referenced recip.best net. - loxAfr3.mm39.rbest.chain.gz: recip.best "liftOver" chains. - axtRBestNet/*.mm39.loxAfr3.net.axt.gz reciprocal best alignments in AXT format See also, description of AXT format:: http://genome.ucsc.edu/goldenPath/help/axt.html description of CHAIN format: http://genome.ucsc.edu/goldenPath/help/chain.html description of NET format: http://genome.ucsc.edu/goldenPath/help/net.html