This directory contains the Feb. 2002 freeze of the mouse genome from the Mouse Genome Sequencing Consortium. This assembly was produced at the Whitehead Institute using their Arachne software. If you plan to download a large file or multiple files from this directory, we recommend that you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/mmFeb2002/bigZips. To download multiple files, use the "mget" command: mget ... - or - mget -a (to download all the files in the directory) ------------------------------------------------------ chromAgp.zip - Description of how the working draft was generated from fragments at a chromosome layout level. chromFa.zip - The working draft sequence chromosome in one file per chromosome. Repeats are in lower case while non-repeating sequence is in upper case. chromFaMasked.zip - The working draft sequence in one file per chromosome. Repeats are masked by capital N's and non-repeating sequence is shown in upper case. chromOut.zip - RepeatMasker .out file for chromosomes. These were done with RepeatMasker at the -s sensitive setting. contigAgp.zip - Description of how the working draft was generated from fragments at a contig layout level. contigFa.zip - The working draft sequence contig in one file per contig. Repeats are in lower case while non-repeating sequence is in upper case. contigFaMasked.zip - The working draft sequence contig in one file per contig. Repeats are masked by capital N's and non-repeating sequence is shown in upper case. contigOut.zip - RepeatMasker .out file for contigs. These were done with RepeatMasker at the -s sensitive setting.