This directory contains the Feb. 2002 freeze of the mouse
genome from the Mouse Genome Sequencing Consortium. This 
assembly was produced at the Whitehead Institute using their 
Arachne software. 

If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/mmFeb2002/bigZips. To download multiple files, use 
the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

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chromAgp.zip - Description of how the working draft was generated from
    fragments at a chromosome layout level. 

chromFa.zip - The working draft sequence chromosome in one file per 
    chromosome.  Repeats are in lower case while non-repeating sequence 
    is in upper case.

chromFaMasked.zip - The working draft sequence in one file per
    chromosome. Repeats are masked by capital N's and non-repeating
    sequence is shown in upper case.

chromOut.zip - RepeatMasker .out file for chromosomes.  These were done
    with RepeatMasker at the -s sensitive setting.

contigAgp.zip - Description of how the working draft was generated from
    fragments at a contig layout level. 

contigFa.zip - The working draft sequence contig in one file per 
    contig.  Repeats are in lower case while non-repeating sequence 
    is in upper case.

contigFaMasked.zip - The working draft sequence contig in one file
    per contig.  Repeats are masked by capital N's and non-repeating
    sequence is shown in upper case.

contigOut.zip - RepeatMasker .out file for contigs.  These were done
    with RepeatMasker at the -s sensitive setting.