This directory contains reciprocal-best netted chains for mm10-GCA_921999005.2.

 - mm10.GCA_921999005.2.rbest.net.gz: mm10-referenced recip.best net to GCA_921999005.2.
 - mm10.GCA_921999005.2.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from mm10 to GCA_921999005.2 through the recip.best net.

 - GCA_921999005.2.mm10.rbest.net.gz: GCA_921999005.2-referenced recip.best net.
 - GCA_921999005.2.mm10.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/mm10.GCA_921999005.2.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html