This directory contains reciprocal-best netted chains for mm10-cavApe1. - mm10.cavApe1.rbest.net.gz: mm10-referenced recip.best net to cavApe1. - mm10.cavApe1.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from mm10 to cavApe1 through the recip.best net. - cavApe1.mm10.rbest.net.gz: cavApe1-referenced recip.best net. - cavApe1.mm10.rbest.chain.gz: recip.best "liftOver" chains. - axtRBestNet/*.mm10.cavApe1.net.axt.gz reciprocal best alignments in AXT format See also, description of AXT format:: http://genome.ucsc.edu/goldenPath/help/axt.html description of CHAIN format: http://genome.ucsc.edu/goldenPath/help/chain.html description of NET format: http://genome.ucsc.edu/goldenPath/help/net.html