This directory contains reciprocal-best netted chains for hg38-saiBol1. - hg38.saiBol1.rbest.net.gz: hg38-referenced recip.best net to saiBol1. - hg38.saiBol1.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from hg38 to saiBol1 through the recip.best net. - saiBol1.hg38.rbest.net.gz: saiBol1-referenced recip.best net. - saiBol1.hg38.rbest.chain.gz: recip.best "liftOver" chains. - directory axtRBestNet/ - reciprocal best alignments in axt file format http://genome.ucsc.edu/goldenPath/help/axt.html