This directory contains reciprocal-best netted chains for hg38-rheMac3.

 - hg38.rheMac3.rbest.net.gz: hg38-referenced recip.best net to rheMac3.
 - hg38.rheMac3.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from hg38 to rheMac3 through the recip.best net.

 - rheMac3.hg38.rbest.net.gz: rheMac3-referenced recip.best net.
 - rheMac3.hg38.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/ directory contains reciprocal best alignments in axt format