This directory contains reciprocal-best netted chains for hg38-ponAbe2.

 - hg38.ponAbe2.rbest.net.gz: hg38-referenced recip.best net to ponAbe2.
 - hg38.ponAbe2.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from hg38 to ponAbe2 through the recip.best net.

 - ponAbe2.hg38.rbest.net.gz: ponAbe2-referenced recip.best net.
 - ponAbe2.hg38.rbest.chain.gz: recip.best "liftOver" chains.

 - directory axtRBestNet/ - reciprocal best alignments in axt file format  
   http://genome.ucsc.edu/goldenPath/help/axt.html