This directory contains reciprocal-best netted chains for hg38-papAnu2.

 - hg38.papAnu2.rbest.net.gz: hg38-referenced recip.best net to papAnu2.
 - hg38.papAnu2.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from hg38 to papAnu2 through the recip.best net.

 - papAnu2.hg38.rbest.net.gz: papAnu2-referenced recip.best net.
 - papAnu2.hg38.rbest.chain.gz: recip.best "liftOver" chains.

 - directory axtRBestNet/ - reciprocal best alignments in axt file format  
   http://genome.ucsc.edu/goldenPath/help/axt.html